Variant report

Variant	rs9484825
Chromosome Location	chr6:144222093-144222094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56113377	0.90[AMR][1000 genomes]
rs56155985	0.81[AMR][1000 genomes]
rs57504094	0.90[AMR][1000 genomes]
rs6938420	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73588612	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73588620	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73588627	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73588636	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9484816	0.90[AMR][1000 genomes]
rs9484827	1.00[EUR][1000 genomes]
rs9484828	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9496789	0.90[AMR][1000 genomes]
rs9496790	0.90[AMR][1000 genomes]
rs9496813	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9496814	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9496815	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144186000-144223000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:144205800-144222600	Weak transcription	Fetal Stomach	stomach
3	chr6:144207200-144222800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:144217800-144222800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:144218200-144222200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:144218400-144222800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:144218400-144224000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:144218800-144222800	Weak transcription	Placenta	Placenta
9	chr6:144219200-144234200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:144221200-144239200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:144221400-144222200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:144221800-144222800	Enhancers	GM12878-XiMat	blood
13	chr6:144222000-144225000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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