Variant report

Variant	rs9484827
Chromosome Location	chr6:144224312-144224313
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12527740	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4140441	1.00[JPT][hapmap]
rs4895623	1.00[JPT][hapmap]
rs4896684	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4896685	1.00[JPT][hapmap]
rs6570586	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs6918150	1.00[GIH][hapmap]
rs6938420	0.93[EUR][1000 genomes]
rs73588612	0.86[EUR][1000 genomes]
rs73588620	0.93[EUR][1000 genomes]
rs73588627	0.93[EUR][1000 genomes]
rs73588636	0.93[EUR][1000 genomes]
rs761541	0.88[CHD][hapmap]
rs7742707	1.00[JPT][hapmap]
rs7755147	1.00[JPT][hapmap]
rs9484816	1.00[GIH][hapmap]
rs9484825	1.00[EUR][1000 genomes]
rs9484828	0.93[EUR][1000 genomes]
rs9496813	0.86[EUR][1000 genomes]
rs9496814	0.93[EUR][1000 genomes]
rs9496815	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144219200-144234200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144221200-144239200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:144222000-144225000	Enhancers	Fetal Lung	lung
4	chr6:144222200-144225000	Enhancers	Fetal Muscle Leg	muscle
5	chr6:144222400-144225000	Enhancers	Ovary	ovary
6	chr6:144222600-144224600	Enhancers	Fetal Stomach	stomach
7	chr6:144222800-144224400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:144222800-144224400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:144222800-144224400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:144222800-144224400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:144222800-144224400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:144222800-144224400	Enhancers	Fetal Kidney	kidney
13	chr6:144222800-144224400	Enhancers	Placenta	Placenta
14	chr6:144222800-144225000	Enhancers	Adipose Nuclei	Adipose
15	chr6:144223000-144224400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:144223000-144224400	Active TSS	Fetal Brain Male	brain
17	chr6:144223000-144224400	Enhancers	NHLF	lung
18	chr6:144223400-144224400	Enhancers	K562	blood
19	chr6:144223800-144224400	Enhancers	Stomach Smooth Muscle	stomach
20	chr6:144223800-144224400	Enhancers	HSMMtube	muscle
21	chr6:144223800-144224400	Enhancers	NHDF-Ad	bronchial
22	chr6:144223800-144225000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:144223800-144231000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:144224000-144224400	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:144224000-144224400	Enhancers	Colonic Mucosa	Colon
26	chr6:144224000-144224400	Enhancers	Fetal Muscle Trunk	muscle
27	chr6:144224200-144225000	ZNF genes & repeats	GM12878-XiMat	blood

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