Variant report

Variant	rs9485034
Chromosome Location	chr6:146258074-146258075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs7750117	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9322039	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485022	1.00[AFR][1000 genomes]
rs9485023	1.00[YRI][hapmap]
rs9485027	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485031	1.00[AFR][1000 genomes]
rs9485032	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485035	1.00[AFR][1000 genomes]
rs9497409	1.00[YRI][hapmap]
rs9497415	1.00[YRI][hapmap]
rs9497420	1.00[YRI][hapmap]
rs9497428	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497429	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497436	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:146220000-146259400	Weak transcription	Esophagus	oesophagus
5	chr6:146220000-146276800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
7	chr6:146220200-146268400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:146225200-146268600	Weak transcription	Stomach Mucosa	stomach
9	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:146226400-146268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:146226800-146270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:146227200-146268800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:146230600-146270400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:146232000-146262400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:146232000-146282800	Weak transcription	NHLF	lung
16	chr6:146233400-146261800	Weak transcription	Aorta	Aorta
17	chr6:146233400-146268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:146235800-146259600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:146240800-146262000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:146240800-146263400	Weak transcription	NHEK	skin
22	chr6:146240800-146264400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:146241600-146271400	Weak transcription	HSMMtube	muscle
24	chr6:146244000-146262000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:146244200-146270400	Weak transcription	Colonic Mucosa	Colon
26	chr6:146244600-146262400	Weak transcription	Hela-S3	cervix
27	chr6:146245200-146259400	Weak transcription	NHDF-Ad	bronchial
28	chr6:146246200-146259400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:146247800-146259000	Weak transcription	Brain Angular Gyrus	brain
30	chr6:146248200-146258400	Weak transcription	Fetal Kidney	kidney
31	chr6:146248400-146259200	Weak transcription	Brain Anterior Caudate	brain
32	chr6:146250800-146270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:146250800-146276400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr6:146251000-146276000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:146251000-146276200	Strong transcription	Primary B cells from cord blood	blood
36	chr6:146251200-146268600	Strong transcription	Liver	Liver
37	chr6:146251200-146276000	Strong transcription	Fetal Thymus	thymus
38	chr6:146251600-146270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:146251600-146276400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:146251600-146276600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:146251600-146276600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:146251800-146268400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:146252000-146262000	Weak transcription	Psoas Muscle	Psoas
44	chr6:146252200-146273400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:146252200-146274600	Strong transcription	Placenta	Placenta
46	chr6:146252600-146266200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:146252800-146264200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:146252800-146266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:146253200-146266800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:146253400-146276400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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