Variant report

Variant	rs9497420
Chromosome Location	chr6:146154831-146154832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12332834	1.00[AFR][1000 genomes]
rs6933180	1.00[AFR][1000 genomes]
rs7750117	1.00[YRI][hapmap]
rs9322039	1.00[YRI][hapmap]
rs9485014	1.00[YRI][hapmap]
rs9485023	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485027	1.00[YRI][hapmap]
rs9485032	1.00[YRI][hapmap]
rs9485034	1.00[YRI][hapmap]
rs9497394	1.00[YRI][hapmap]
rs9497399	1.00[YRI][hapmap]
rs9497409	1.00[YRI][hapmap]
rs9497414	1.00[AFR][1000 genomes]
rs9497415	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497421	1.00[AFR][1000 genomes]
rs9497428	1.00[YRI][hapmap]
rs9497429	1.00[YRI][hapmap]
rs9497436	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
5	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
6	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
8	chr6:146150600-146155000	Weak transcription	Ovary	ovary
9	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
10	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
11	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
12	chr6:146151600-146157200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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