Variant report

Variant	rs9497421
Chromosome Location	chr6:146168006-146168007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12332834	1.00[AFR][1000 genomes]
rs6933180	1.00[AFR][1000 genomes]
rs9485023	1.00[AFR][1000 genomes]
rs9497414	1.00[AFR][1000 genomes]
rs9497415	1.00[AFR][1000 genomes]
rs9497420	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
2	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
3	chr6:146159600-146171400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:146160400-146171400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:146163200-146169600	Weak transcription	Fetal Stomach	stomach
6	chr6:146163400-146168400	Weak transcription	Brain Angular Gyrus	brain
7	chr6:146163800-146175000	Weak transcription	Left Ventricle	heart
8	chr6:146164600-146169200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:146164600-146170000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:146164600-146171400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:146164800-146170400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:146166400-146171200	Weak transcription	Osteobl	bone
13	chr6:146166600-146171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:146166600-146171200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:146166800-146171200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:146167400-146170000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:146167400-146171200	Weak transcription	Psoas Muscle	Psoas
18	chr6:146167800-146168400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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