Variant report
| Variant | rs9485051 |
|---|---|
| Chromosome Location | chr6:146491401-146491402 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| FUNDC2P3 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs17075537 | 1.00[EUR][1000 genomes] |
| rs17075701 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1997766 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34554138 | 1.00[EUR][1000 genomes] |
| rs362866 | 1.00[EUR][1000 genomes] |
| rs362875 | 1.00[EUR][1000 genomes] |
| rs9485053 | 1.00[EUR][1000 genomes] |
| rs9497462 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497512 | 1.00[EUR][1000 genomes] |
| rs9497513 | 0.94[AFR][1000 genomes] |
| rs9497518 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604839 | chr6:146305810-146828922 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830836 | chr6:146423405-146598983 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
