Variant report

Variant	rs17075537
Chromosome Location	chr6:146274021-146274022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146264461..146268598-chr6:146269402..146274122,4	K562	blood:
2	chr6:146133842..146136202-chr6:146273758..146275982,2	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11961703	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs1856244	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2777475	0.88[YRI][hapmap]
rs2814864	0.82[YRI][hapmap]
rs6570726	0.88[YRI][hapmap]
rs868721	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9485051	1.00[EUR][1000 genomes]
rs9485053	1.00[EUR][1000 genomes]
rs9497462	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:146220000-146276800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
5	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:146232000-146282800	Weak transcription	NHLF	lung
7	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:146250800-146276400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:146251000-146276000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:146251000-146276200	Strong transcription	Primary B cells from cord blood	blood
11	chr6:146251200-146276000	Strong transcription	Fetal Thymus	thymus
12	chr6:146251600-146276400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:146251600-146276600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:146251600-146276600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:146252200-146274600	Strong transcription	Placenta	Placenta
16	chr6:146253400-146276400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:146253600-146276000	Strong transcription	Fetal Lung	lung
18	chr6:146255800-146282000	Weak transcription	Right Ventricle	heart
19	chr6:146256600-146282000	Weak transcription	Lung	lung
20	chr6:146257400-146275800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:146258000-146276600	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr6:146258400-146276400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr6:146258400-146276600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:146258400-146276600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:146258600-146276200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:146258600-146276200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:146258600-146276400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr6:146258600-146276600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:146258600-146276600	Strong transcription	Dnd41	blood
30	chr6:146258800-146276200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr6:146259000-146276000	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:146259200-146274600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:146259600-146282000	Weak transcription	Esophagus	oesophagus
34	chr6:146259600-146283200	Weak transcription	Fetal Intestine Small	intestine
35	chr6:146261600-146275600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:146261800-146274200	Strong transcription	Primary T cells from cord blood	blood
37	chr6:146262200-146283400	Weak transcription	Fetal Stomach	stomach
38	chr6:146262400-146281400	Weak transcription	Thymus	Thymus
39	chr6:146264400-146282000	Weak transcription	Pancreas	Pancrea
40	chr6:146264600-146276600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:146264800-146284600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr6:146265600-146274200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:146267000-146281800	Weak transcription	Brain Substantia Nigra	brain
44	chr6:146267000-146284200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:146267600-146282600	Weak transcription	Hela-S3	cervix
46	chr6:146268400-146274600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:146268400-146275800	Strong transcription	K562	blood
48	chr6:146268400-146276600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:146268400-146276600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:146268400-146276600	Strong transcription	Fetal Intestine Large	intestine

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