Variant report

Variant	rs1856244
Chromosome Location	chr6:146162458-146162459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146162034..146165006-chr6:146165073..146167204,2	K562	blood:
2	chr6:146161591..146163305-chr6:146169579..146172257,2	MCF-7	breast:
3	chr6:146133961..146138994-chr6:146162007..146166567,6	K562	blood:
4	chr6:146158963..146161449-chr6:146161903..146164839,3	K562	blood:
5	chr6:146160656..146162566-chr6:146164304..146167235,2	MCF-7	breast:
6	chr6:146133832..146137079-chr6:146162007..146165593,4	K562	blood:

Variant related genes	Relation type
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11961703	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075280	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17075537	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2777475	0.87[YRI][hapmap]
rs2814864	0.81[YRI][hapmap]
rs6570726	0.88[YRI][hapmap]
rs868721	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3442707	chr6:146160559-146162982	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3370783	chr6:146160809-146162657	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
4	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
5	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
6	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
7	chr6:146157600-146163200	Weak transcription	Brain Germinal Matrix	brain
8	chr6:146157800-146162800	Weak transcription	Gastric	stomach
9	chr6:146158000-146163400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:146158200-146163600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:146158200-146163600	Weak transcription	HSMMtube	muscle
12	chr6:146158200-146163600	Weak transcription	Osteobl	bone
13	chr6:146158200-146164200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:146158200-146166000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:146158400-146163600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:146159600-146162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:146159600-146171400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:146159800-146163600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:146160400-146165800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:146160400-146171400	Weak transcription	Primary T cells from cord blood	blood
21	chr6:146160600-146163000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:146160600-146163400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:146162400-146164000	Enhancers	Stomach Smooth Muscle	stomach
24	chr6:146162400-146164400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:146162400-146165200	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:146162400-146166600	Enhancers	Colon Smooth Muscle	Colon

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