Variant report

Variant	rs11961703
Chromosome Location	chr6:146151397-146151398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17075280	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs17075537	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs1856244	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2777475	0.82[YRI][hapmap]
rs2814864	0.88[YRI][hapmap]
rs6570726	0.81[YRI][hapmap]
rs868721	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:146137800-146152800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
6	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
7	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
9	chr6:146150200-146151400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:146150200-146151600	Enhancers	Osteobl	bone
11	chr6:146150600-146155000	Weak transcription	Ovary	ovary
12	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
13	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
14	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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