Variant report

Variant	rs868721
Chromosome Location	chr6:146164450-146164451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146160656..146162566-chr6:146164304..146167235,2	MCF-7	breast:
2	chr6:146162034..146165006-chr6:146165073..146167204,2	K562	blood:
3	chr6:146133961..146138994-chr6:146162007..146166567,6	K562	blood:
4	chr6:146158963..146161449-chr6:146161903..146164839,3	K562	blood:
5	chr6:146055435..146057353-chr6:146163766..146166358,2	K562	blood:
6	chr6:146133832..146137079-chr6:146162007..146165593,4	K562	blood:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11961703	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075280	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17075537	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1856244	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2777475	0.88[YRI][hapmap]
rs2814864	0.82[YRI][hapmap]
rs6570726	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
4	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
5	chr6:146158200-146166000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:146159600-146171400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:146160400-146165800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:146160400-146171400	Weak transcription	Primary T cells from cord blood	blood
9	chr6:146162400-146165200	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:146162400-146166600	Enhancers	Colon Smooth Muscle	Colon
11	chr6:146163200-146164600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:146163200-146169600	Weak transcription	Fetal Stomach	stomach
13	chr6:146163400-146164600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:146163400-146168400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:146163600-146164600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:146163600-146164600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:146163600-146164600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:146163600-146164800	Enhancers	Fetal Lung	lung
19	chr6:146163800-146164600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:146163800-146164600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:146163800-146164800	Enhancers	Adipose Nuclei	Adipose
22	chr6:146163800-146164800	Weak transcription	Ovary	ovary
23	chr6:146163800-146175000	Weak transcription	Left Ventricle	heart
24	chr6:146164000-146166200	Weak transcription	Fetal Heart	heart
25	chr6:146164000-146166200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:146164200-146164600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:146164200-146164600	Active TSS	Stomach Smooth Muscle	stomach
28	chr6:146164200-146165800	Weak transcription	HSMMtube	muscle
29	chr6:146164400-146166000	Weak transcription	Osteobl	bone

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