Variant report

Variant	rs9486458
Chromosome Location	chr6:107196452-107196453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:86)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:86 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:107196400-107196550	Hela-S3	cervix:	n/a	n/a
2	YY1	chr6:107196221-107196988	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr6:107196439-107197064	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr6:107196400-107196550	HCPEpiC	choroid plexus:	n/a	n/a
5	ATF2	chr6:107196349-107196913	H1-hESC	embryonic stem cell:	n/a	n/a
6	YY1	chr6:107196418-107196803	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr6:107196380-107196530	HRPEpiC	eye:	n/a	n/a
8	CTCF	chr6:107196440-107196590	GM12867	blood:	n/a	n/a
9	CTCF	chr6:107196360-107196510	GM12878	blood:	n/a	n/a
10	CTCF	chr6:107196449-107196570	MCF-7	breast:	n/a	n/a
11	CTCF	chr6:107196400-107196550	GM12874	blood:	n/a	n/a
12	CTCF	chr6:107196440-107196590	GM12873	blood:	n/a	n/a
13	CTCF	chr6:107196360-107196510	GM12873	blood:	n/a	n/a
14	CTCF	chr6:107196404-107196562	GM12878	blood:	n/a	n/a
15	SP1	chr6:107196390-107196944	H1-hESC	embryonic stem cell:	n/a	n/a
16	RAD21	chr6:107196405-107196605	HepG2	liver:	n/a	n/a
17	CTCF	chr6:107196420-107196570	GM12864	blood:	n/a	n/a
18	CTBP2	chr6:107196239-107196985	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr6:107196340-107196490	HEEpiC	esophagus:	n/a	n/a
20	CTCF	chr6:107196440-107196590	GM12871	blood:	n/a	n/a
21	CTCF	chr6:107196420-107196570	HCFaa	heart:	n/a	n/a
22	CTCF	chr6:107196440-107196590	GM12865	blood:	n/a	n/a
23	CTCF	chr6:107196420-107196570	A549	lung:	n/a	n/a
24	CTCF	chr6:107196440-107196590	K562	blood:	n/a	n/a
25	RAD21	chr6:107196199-107196981	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr6:107196380-107196530	Caco-2	colon:	n/a	n/a
27	CTCF	chr6:107196420-107196570	Hela-S3	cervix:	n/a	n/a
28	NANOG	chr6:107196396-107196962	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTCF	chr6:107196340-107196490	BE2_C	brain:	n/a	n/a
30	CTCF	chr6:107196440-107196590	HRE	kidney:	n/a	n/a
31	CTCF	chr6:107196380-107196530	GM12874	blood:	n/a	n/a
32	CTCF	chr6:107196340-107196490	GM12866	blood:	n/a	n/a
33	CTCF	chr6:107196440-107196590	RPTEC	kidney:	n/a	n/a
34	CTCF	chr6:107196380-107196530	GM12864	blood:	n/a	n/a
35	CTCF	chr6:107196295-107196654	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr6:107196420-107196570	NHEK	skin:	n/a	n/a
37	CTCF	chr6:107196440-107196590	HVMF	connective:	n/a	n/a
38	CTCF	chr6:107196399-107196644	K562	blood:	n/a	n/a
39	CTCF	chr6:107196400-107196550	GM12875	blood:	n/a	n/a
40	CTCF	chr6:107196440-107196590	HBMEC	blood vessel:	n/a	n/a
41	CTCF	chr6:107196440-107196590	GM12872	blood:	n/a	n/a
42	CTCF	chr6:107196340-107196490	NHDF-neo	bronchial:	n/a	n/a
43	CTCF	chr6:107196440-107196590	NHLF	lung:	n/a	n/a
44	CTCF	chr6:107196380-107196530	GM12868	blood:	n/a	n/a
45	CTCF	chr6:107196420-107196570	GM12869	blood:	n/a	n/a
46	CTCF	chr6:107196420-107196570	HMF	breast:	n/a	n/a
47	CTCF	chr6:107196380-107196530	HepG2	liver:	n/a	n/a
48	CTCF	chr6:107196400-107196550	K562	blood:	n/a	n/a
49	CTCF	chr6:107196440-107196590	NHEK	skin:	n/a	n/a
50	HDAC2	chr6:107196379-107196934	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:107193387..107196491-chr6:107229879..107233395,4	MCF-7	breast:
2	chr6:107189266..107192356-chr6:107195011..107199023,4	K562	blood:
3	chr6:107195540..107198974-chr6:107203128..107206531,3	MCF-7	breast:
4	chr6:107191864..107193418-chr6:107195450..107197990,2	MCF-7	breast:
5	chr6:107189266..107191928-chr6:107196041..107199023,3	K562	blood:
6	chr6:107191814..107196655-chr6:107220470..107222924,4	MCF-7	breast:
7	chr4:77876919..77878897-chr6:107196410..107199207,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RTN4IP1-2	chr6:107187576-107197663	NONHSAT114255

No data

Variant related genes	Relation type
ENSG00000235142	TF binding region
ENSG00000235142	Chromatin interaction
ENSG00000207577	Chromatin interaction

rs_ID	r²[population]
rs17067716	1.00[EUR][1000 genomes]
rs56838214	1.00[EUR][1000 genomes]
rs58207285	1.00[EUR][1000 genomes]
rs62427582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427584	1.00[EUR][1000 genomes]
rs62427585	1.00[EUR][1000 genomes]
rs62427586	1.00[EUR][1000 genomes]
rs62427587	1.00[EUR][1000 genomes]
rs62427588	1.00[EUR][1000 genomes]
rs62427589	1.00[EUR][1000 genomes]
rs732290	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7768266	1.00[EUR][1000 genomes]
rs7769052	1.00[EUR][1000 genomes]

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:107191000-107200800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:107191200-107200400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:107192800-107200000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:107193000-107198400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:107193800-107199200	Weak transcription	Liver	Liver
7	chr6:107194200-107197600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:107194200-107197800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:107194200-107198400	Weak transcription	Esophagus	oesophagus
10	chr6:107194400-107197600	Weak transcription	Colonic Mucosa	Colon
11	chr6:107194400-107199400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:107194400-107199400	Weak transcription	Psoas Muscle	Psoas
13	chr6:107194800-107196800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:107195000-107198800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:107195200-107196600	Weak transcription	Fetal Intestine Small	intestine
16	chr6:107195200-107196800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:107195200-107198400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:107195200-107199400	Weak transcription	HSMMtube	muscle
19	chr6:107195200-107200200	Enhancers	A549	lung
20	chr6:107195400-107196800	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:107195400-107197600	Weak transcription	Placenta	Placenta
22	chr6:107195400-107197600	Enhancers	Hela-S3	cervix
23	chr6:107195400-107197800	Weak transcription	Stomach Mucosa	stomach
24	chr6:107195400-107198000	Weak transcription	HSMM	muscle
25	chr6:107195800-107196800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:107195800-107196800	Weak transcription	HMEC	breast
27	chr6:107195800-107199000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:107196000-107196800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:107196000-107197800	Enhancers	HepG2	liver
30	chr6:107196000-107198400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:107196000-107199400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:107196000-107200000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:107196200-107197400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr6:107196200-107198200	Enhancers	H9 Cell Line	embryonic stem cell
35	chr6:107196200-107198600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:107196200-107198600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:107196200-107198800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr6:107196200-107199200	Enhancers	Pancreas	Pancrea
39	chr6:107196200-107200200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:107196200-107200200	Enhancers	NHEK	skin
41	chr6:107196200-107200400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:107196400-107197000	Enhancers	Gastric	stomach
43	chr6:107196400-107197800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:107196400-107198200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:107196400-107198600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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