Variant report

Variant	rs9488327
Chromosome Location	chr6:114444868-114444869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2275093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2475619	1.00[JPT][hapmap]
rs2475621	1.00[JPT][hapmap]
rs4551200	1.00[JPT][hapmap]
rs60751360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73536646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73536652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9398370	1.00[JPT][hapmap]
rs9481419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488309	1.00[AMR][1000 genomes]
rs9488315	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9488316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9488323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488333	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:114438000-114445200	Weak transcription	Psoas Muscle	Psoas
3	chr6:114439400-114446800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:114443600-114445200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:114444000-114445000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:114444000-114445200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:114444000-114445200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:114444000-114445200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:114444000-114445200	Weak transcription	HSMM	muscle
10	chr6:114444000-114446800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:114444000-114446800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:114444000-114446800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:114444000-114449600	Weak transcription	HepG2	liver
14	chr6:114444000-114465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:114444000-114466000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:114444200-114446800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:114444800-114445000	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links