Variant report

Variant	rs9488309
Chromosome Location	chr6:114341619-114341620
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2275093	1.00[AMR][1000 genomes]
rs59475978	1.00[ASN][1000 genomes]
rs60751360	1.00[AMR][1000 genomes]
rs73536646	1.00[AMR][1000 genomes]
rs73536652	1.00[AMR][1000 genomes]
rs73548657	1.00[ASN][1000 genomes]
rs73550326	1.00[ASN][1000 genomes]
rs73550330	1.00[ASN][1000 genomes]
rs73550347	1.00[ASN][1000 genomes]
rs73550350	1.00[ASN][1000 genomes]
rs73552450	1.00[ASN][1000 genomes]
rs9481419	1.00[AMR][1000 genomes]
rs9488307	1.00[ASN][1000 genomes]
rs9488315	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488316	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488323	1.00[AMR][1000 genomes]
rs9488326	1.00[AMR][1000 genomes]
rs9488327	1.00[AMR][1000 genomes]
rs9488332	1.00[AMR][1000 genomes]
rs9488333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:114338600-114352200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:114339800-114342600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:114339800-114343600	Weak transcription	Stomach Mucosa	stomach
5	chr6:114339800-114345200	Weak transcription	HSMM	muscle
6	chr6:114340600-114341800	Strong transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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