Variant report

Variant	rs59475978
Chromosome Location	chr6:114332460-114332461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCKS-9	chr6:114332244-114332601	l_3238_NR_027060

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73548657	1.00[ASN][1000 genomes]
rs73550326	1.00[ASN][1000 genomes]
rs73550330	1.00[ASN][1000 genomes]
rs73550347	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73550350	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73552450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488307	1.00[ASN][1000 genomes]
rs9488309	1.00[ASN][1000 genomes]
rs9488315	1.00[ASN][1000 genomes]
rs9488316	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114328200-114333000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:114328200-114333200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:114328400-114332600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:114328400-114332800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:114329200-114333000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:114329800-114338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:114330000-114335200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:114330600-114335000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:114330800-114332600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:114331200-114332600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:114331200-114333000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:114331200-114333000	Enhancers	Stomach Mucosa	stomach
14	chr6:114331400-114332800	Enhancers	Fetal Intestine Large	intestine
15	chr6:114331400-114332800	Enhancers	HSMMtube	muscle
16	chr6:114331400-114333000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:114331400-114333000	Enhancers	HSMM	muscle
18	chr6:114331600-114332800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:114331600-114333000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:114331800-114332600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:114331800-114332800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:114332000-114332600	Flanking Active TSS	Placenta	Placenta
23	chr6:114332000-114333000	Enhancers	Fetal Heart	heart
24	chr6:114332000-114333600	Enhancers	Fetal Thymus	thymus
25	chr6:114332200-114332600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:114332200-114332600	Enhancers	Brain Angular Gyrus	brain
27	chr6:114332200-114332800	Enhancers	Dnd41	blood
28	chr6:114332200-114333000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:114332200-114333000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:114332400-114332600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:114332400-114332600	Enhancers	Brain Anterior Caudate	brain
32	chr6:114332400-114332800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:114332400-114332800	Enhancers	Brain Hippocampus Middle	brain

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