Variant report

Variant	rs73550326
Chromosome Location	chr6:114314437-114314438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59475978	1.00[ASN][1000 genomes]
rs73548657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73550330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73550347	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73550350	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73552450	1.00[ASN][1000 genomes]
rs9488307	1.00[ASN][1000 genomes]
rs9488309	1.00[ASN][1000 genomes]
rs9488315	1.00[ASN][1000 genomes]
rs9488316	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114307600-114315200	Weak transcription	HSMMtube	muscle
2	chr6:114308600-114315600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:114309400-114318600	Weak transcription	Right Atrium	heart
4	chr6:114311200-114315400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:114311600-114317000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:114311600-114317000	Weak transcription	Placenta	Placenta
7	chr6:114311800-114332400	Weak transcription	Fetal Brain Female	brain
8	chr6:114313000-114316200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:114313200-114316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links