Variant report

Variant	rs73552450
Chromosome Location	chr6:114332195-114332196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59475978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73548657	1.00[ASN][1000 genomes]
rs73550326	1.00[ASN][1000 genomes]
rs73550330	1.00[ASN][1000 genomes]
rs73550347	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73550350	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488307	1.00[ASN][1000 genomes]
rs9488309	1.00[ASN][1000 genomes]
rs9488315	1.00[ASN][1000 genomes]
rs9488316	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114311800-114332400	Weak transcription	Fetal Brain Female	brain
2	chr6:114328200-114333000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:114328200-114333200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:114328400-114332600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:114328400-114332800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:114329200-114332400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:114329200-114333000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:114329400-114332400	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:114329800-114332200	Weak transcription	Dnd41	blood
11	chr6:114329800-114338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:114330000-114335200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:114330200-114332400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:114330200-114332400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:114330600-114332200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:114330600-114335000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:114330800-114332200	Weak transcription	Brain Angular Gyrus	brain
18	chr6:114330800-114332600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr6:114331200-114332200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:114331200-114332600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:114331200-114333000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:114331200-114333000	Enhancers	Stomach Mucosa	stomach
23	chr6:114331400-114332200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:114331400-114332400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:114331400-114332800	Enhancers	Fetal Intestine Large	intestine
26	chr6:114331400-114332800	Enhancers	HSMMtube	muscle
27	chr6:114331400-114333000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:114331400-114333000	Enhancers	HSMM	muscle
29	chr6:114331600-114332800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:114331600-114333000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:114331800-114332200	Enhancers	Fetal Intestine Small	intestine
32	chr6:114331800-114332600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:114331800-114332800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:114332000-114332600	Flanking Active TSS	Placenta	Placenta
35	chr6:114332000-114333000	Enhancers	Fetal Heart	heart
36	chr6:114332000-114333600	Enhancers	Fetal Thymus	thymus

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