Variant report

Variant	rs73550347
Chromosome Location	chr6:114320732-114320733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCKS-5	chr6:114320701-114320962	ENSG00000228624

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59475978	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73548657	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73550326	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73550330	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73550350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73552450	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488307	1.00[ASN][1000 genomes]
rs9488309	1.00[ASN][1000 genomes]
rs9488315	1.00[ASN][1000 genomes]
rs9488316	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114311800-114332400	Weak transcription	Fetal Brain Female	brain
2	chr6:114314600-114331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:114317000-114323400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:114317200-114320800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:114317200-114323000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:114317200-114323400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:114317200-114323600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:114317200-114328200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:114317400-114321400	Weak transcription	Stomach Mucosa	stomach
10	chr6:114317400-114322000	Enhancers	Brain Hippocampus Middle	brain
11	chr6:114317400-114328400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:114317800-114321000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:114317800-114321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:114318000-114323000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:114318600-114322000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:114318800-114322400	Enhancers	NHDF-Ad	bronchial
17	chr6:114318800-114323000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:114318800-114331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:114319000-114321200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:114319000-114321200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:114319200-114320800	Enhancers	Brain Angular Gyrus	brain
22	chr6:114319200-114321000	Genic enhancers	HSMM	muscle
23	chr6:114319200-114321200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:114319200-114321200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:114319200-114321600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:114319200-114321600	Weak transcription	NHLF	lung
27	chr6:114319200-114321600	Weak transcription	Osteobl	bone
28	chr6:114319200-114328600	Weak transcription	NH-A	brain
29	chr6:114319600-114320800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:114320000-114320800	Weak transcription	Brain Substantia Nigra	brain
31	chr6:114320000-114320800	Weak transcription	HUVEC	blood vessel
32	chr6:114320000-114321400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:114320000-114323800	Enhancers	Hela-S3	cervix
34	chr6:114320600-114322000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:114320600-114322000	Flanking Active TSS	HSMMtube	muscle
36	chr6:114320600-114324200	Enhancers	Brain Anterior Caudate	brain

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