Variant report

Variant	rs9488307
Chromosome Location	chr6:114330032-114330033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2475619	1.00[JPT][hapmap]
rs2475621	1.00[JPT][hapmap]
rs4551200	1.00[JPT][hapmap]
rs59475978	1.00[ASN][1000 genomes]
rs73548657	1.00[ASN][1000 genomes]
rs73550326	1.00[ASN][1000 genomes]
rs73550330	1.00[ASN][1000 genomes]
rs73550347	1.00[ASN][1000 genomes]
rs73550350	1.00[ASN][1000 genomes]
rs73552450	1.00[ASN][1000 genomes]
rs9398370	1.00[JPT][hapmap]
rs9481419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9488309	1.00[ASN][1000 genomes]
rs9488315	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9488316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114311800-114332400	Weak transcription	Fetal Brain Female	brain
2	chr6:114314600-114331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:114318800-114331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:114322000-114330400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:114328200-114330600	Enhancers	HUVEC	blood vessel
6	chr6:114328200-114333000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:114328200-114333200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:114328400-114330800	Enhancers	Brain Angular Gyrus	brain
9	chr6:114328400-114331400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:114328400-114332600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:114328400-114332800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:114328600-114330400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:114329200-114331000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:114329200-114332000	Weak transcription	Fetal Thymus	thymus
15	chr6:114329200-114332400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:114329200-114333000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:114329400-114332400	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:114329600-114331000	Enhancers	Fetal Intestine Large	intestine
20	chr6:114329800-114330200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:114329800-114331000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:114329800-114331000	Weak transcription	Placenta	Placenta
23	chr6:114329800-114331200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:114329800-114331200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:114329800-114331400	Weak transcription	HSMM	muscle
26	chr6:114329800-114331400	Weak transcription	HSMMtube	muscle
27	chr6:114329800-114332200	Weak transcription	Dnd41	blood
28	chr6:114329800-114338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:114330000-114330400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:114330000-114330600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:114330000-114335200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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