Variant report

Variant	rs9489475
Chromosome Location	chr6:118943349-118943350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118022095..118025042-chr6:118942481..118945172,2	K562	blood:
2	chr6:118934931..118936931-chr6:118942761..118945243,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081007	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13437605	0.80[AFR][1000 genomes]
rs2356501	0.88[AFR][1000 genomes]
rs62422220	0.87[AFR][1000 genomes]
rs62422223	0.88[AFR][1000 genomes]
rs62422227	0.87[AFR][1000 genomes]
rs62422228	0.87[AFR][1000 genomes]
rs62422229	0.84[AFR][1000 genomes]
rs72956993	0.87[AFR][1000 genomes]
rs9320660	0.87[AFR][1000 genomes]
rs9481814	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9481820	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9481833	0.83[AFR][1000 genomes]
rs9481836	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9489413	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9489431	1.00[ASN][1000 genomes]
rs9489444	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9489447	0.80[AFR][1000 genomes]
rs9489450	0.80[AFR][1000 genomes]
rs9489452	0.80[AFR][1000 genomes]
rs9489457	0.83[AFR][1000 genomes]
rs9489458	0.83[AFR][1000 genomes]
rs9489460	0.87[AFR][1000 genomes]
rs9489462	0.84[AFR][1000 genomes]
rs9489463	0.87[AFR][1000 genomes]
rs9489466	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9489467	0.88[AFR][1000 genomes]
rs9489471	1.00[ASN][1000 genomes]
rs9489477	0.88[AFR][1000 genomes]
rs9489482	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9489491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	esv3451317	chr6:118938758-118947624	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118912200-118966200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:118920800-118951200	Weak transcription	HSMM	muscle
3	chr6:118925000-118945000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:118926600-118947000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:118927000-118965000	Weak transcription	NHLF	lung
6	chr6:118928000-118952000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:118928800-118951800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:118928800-118951800	Weak transcription	Spleen	Spleen
9	chr6:118929200-118947000	Weak transcription	Thymus	Thymus
10	chr6:118931600-118970400	Weak transcription	NH-A	brain
11	chr6:118933600-118946800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:118935600-118951400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:118937000-118947000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:118937200-118946200	Weak transcription	Dnd41	blood
15	chr6:118937800-118947000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:118938800-118944600	Weak transcription	Fetal Lung	lung
17	chr6:118939000-118944200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:118939200-118943400	Weak transcription	Right Ventricle	heart
19	chr6:118939200-118946000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:118939200-118946400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:118939600-118943600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:118940200-118947000	Weak transcription	K562	blood
23	chr6:118940200-118966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:118940400-118943400	Weak transcription	Osteobl	bone
25	chr6:118940400-118943600	Weak transcription	Gastric	stomach
26	chr6:118940400-118945000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:118940400-118945600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:118940400-118946200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:118940400-118946800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:118940400-118947200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:118940400-118947800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:118940400-118947800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:118940400-118950200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:118940400-118951800	Weak transcription	HMEC	breast
35	chr6:118940400-118960600	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:118940600-118945000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:118940600-118946800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:118940600-118948600	Weak transcription	Brain Anterior Caudate	brain
39	chr6:118940600-118951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:118940600-118955200	Weak transcription	Brain Substantia Nigra	brain
41	chr6:118940800-118943600	Weak transcription	Ovary	ovary
42	chr6:118940800-118944800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:118940800-118947000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:118940800-118947200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr6:118940800-118951400	Weak transcription	Left Ventricle	heart
46	chr6:118940800-118953400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:118940800-118954800	Weak transcription	Lung	lung
48	chr6:118940800-118955000	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:118940800-118960200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:118941000-118945000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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