Variant report

Variant	rs9491917
Chromosome Location	chr6:128488612-128488613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9491910	1.00[YRI][hapmap]
rs9491912	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9491925	1.00[AMR][1000 genomes]
rs9491926	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9491934	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886651	chr6:128450019-128565778	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv886652	chr6:128455539-128496557	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv886653	chr6:128455539-128555805	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv886654	chr6:128471938-128555805	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128452600-128505200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:128456800-128488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:128461400-128504400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:128465600-128504400	Weak transcription	Fetal Thymus	thymus
5	chr6:128465600-128523200	Weak transcription	Left Ventricle	heart
6	chr6:128466200-128494000	Weak transcription	Fetal Heart	heart
7	chr6:128469400-128496200	Weak transcription	HepG2	liver
8	chr6:128472400-128494200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:128473600-128489200	Weak transcription	HMEC	breast
10	chr6:128477800-128504200	Weak transcription	HSMM	muscle
11	chr6:128479800-128488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:128480200-128494000	Weak transcription	NH-A	brain
13	chr6:128481000-128489200	Weak transcription	HUVEC	blood vessel
14	chr6:128481200-128489200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:128486000-128489600	Weak transcription	Fetal Intestine Small	intestine
16	chr6:128487200-128494200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:128487400-128494000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:128487800-128489800	Weak transcription	Fetal Lung	lung
19	chr6:128488200-128508000	Weak transcription	Aorta	Aorta
20	chr6:128488200-128565200	Weak transcription	Fetal Stomach	stomach
21	chr6:128488400-128489000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:128488600-128489800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:128488600-128489800	Enhancers	NHEK	skin

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