Variant report

Variant	rs9493134
Chromosome Location	chr6:132237028-132237029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132232580-132243347..6:132269655-132282174	GM12878	blood:
2	6:132182612-132191683..6:132232580-132243347	Hela-S3	cervix:
3	6:132176847-132180372..6:132232580-132243347	GM12878	blood:
4	6:132232580-132243347..6:132646256-132647474	K562	blood:
5	6:132232580-132243347..6:132641847-132646256	GM12878	blood:

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17060921	1.00[AMR][1000 genomes]
rs41441044	1.00[AMR][1000 genomes]
rs59349321	1.00[AMR][1000 genomes]
rs9493131	1.00[YRI][hapmap]
rs9493155	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132229400-132238800	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:132229400-132240000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:132229600-132238400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:132230000-132238800	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr6:132233800-132238000	Weak transcription	NH-A	brain
6	chr6:132234000-132237600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:132234400-132240400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:132235400-132239000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr6:132235400-132240600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr6:132236200-132240600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr6:132236400-132238000	Weak transcription	HSMMtube	muscle
12	chr6:132236600-132238400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:132236600-132240600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr6:132236800-132237200	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:132236800-132237800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:132236800-132237800	Weak transcription	HSMM	muscle
17	chr6:132236800-132238000	Weak transcription	Osteobl	bone
18	chr6:132236800-132238400	Weak transcription	Fetal Heart	heart
19	chr6:132236800-132239400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:132237000-132237800	Weak transcription	HUVEC	blood vessel
21	chr6:132237000-132238800	Weak transcription	Brain Substantia Nigra	brain

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