Variant report

Variant	rs9493131
Chromosome Location	chr6:132232952-132232953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000079931	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs36094194	1.00[AMR][1000 genomes]
rs61475340	1.00[AMR][1000 genomes]
rs73539676	1.00[AMR][1000 genomes]
rs9493134	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132226600-132236600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:132229200-132235800	Strong transcription	H1 Cell Line	embryonic stem cell
3	chr6:132229400-132234000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:132229400-132235400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:132229400-132238800	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:132229400-132240000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:132229600-132238400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:132230000-132238800	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr6:132231200-132233200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:132231200-132236000	Weak transcription	HepG2	liver
11	chr6:132231200-132236600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:132231400-132233000	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:132231800-132236200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:132232600-132233600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr6:132232600-132235400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:132232800-132233200	Enhancers	NH-A	brain
17	chr6:132232800-132233600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:132232800-132233800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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