Variant report

Variant	rs36094194
Chromosome Location	chr6:132059233-132059234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58180314	1.00[AMR][1000 genomes]
rs61238806	1.00[AMR][1000 genomes]
rs61475340	1.00[AMR][1000 genomes]
rs6919802	1.00[AMR][1000 genomes]
rs6921078	1.00[AMR][1000 genomes]
rs73539676	1.00[AMR][1000 genomes]
rs73779851	1.00[AMR][1000 genomes]
rs7740316	1.00[AMR][1000 genomes]
rs7741366	1.00[AMR][1000 genomes]
rs7741575	1.00[AMR][1000 genomes]
rs7758247	1.00[AMR][1000 genomes]
rs7758830	1.00[AMR][1000 genomes]
rs7761857	1.00[AMR][1000 genomes]
rs7769790	1.00[AMR][1000 genomes]
rs9493131	1.00[AMR][1000 genomes]
rs9942427	1.00[AMR][1000 genomes]
rs9942477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132040600-132063200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:132048200-132065200	Weak transcription	Liver	Liver
3	chr6:132048400-132065200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:132054000-132061800	Strong transcription	HepG2	liver
5	chr6:132055000-132065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:132055200-132060600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:132055200-132065800	Weak transcription	K562	blood
8	chr6:132055600-132061200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:132055600-132061200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:132057400-132060400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:132057600-132063000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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