Variant report

Variant	rs9942477
Chromosome Location	chr6:131853791-131853792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs36094194	1.00[AMR][1000 genomes]
rs58180314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61238806	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921078	1.00[AMR][1000 genomes]
rs73779851	1.00[AMR][1000 genomes]
rs7740316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7769790	1.00[AMR][1000 genomes]
rs9942427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886667	chr6:131807510-131876943	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131840400-131856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:131850200-131855400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:131850800-131855400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:131851200-131853800	Weak transcription	Dnd41	blood
5	chr6:131851600-131855400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:131852000-131854600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:131852000-131855400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:131852000-131855400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:131852200-131855400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:131852600-131853800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:131852600-131853800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:131852600-131855400	Enhancers	Primary T cells from cord blood	blood
13	chr6:131852800-131853800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:131852800-131854000	Weak transcription	HepG2	liver
15	chr6:131853200-131856000	Enhancers	Fetal Brain Male	brain
16	chr6:131853600-131854000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:131853600-131855400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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