Variant report

Variant	rs7769790
Chromosome Location	chr6:131888552-131888553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs36094194	1.00[AMR][1000 genomes]
rs58180314	1.00[AMR][1000 genomes]
rs61238806	1.00[AMR][1000 genomes]
rs6919802	1.00[AMR][1000 genomes]
rs6921078	1.00[AMR][1000 genomes]
rs73779851	1.00[AMR][1000 genomes]
rs7740316	1.00[AMR][1000 genomes]
rs7741366	1.00[AMR][1000 genomes]
rs7741575	1.00[AMR][1000 genomes]
rs7758247	1.00[AMR][1000 genomes]
rs7758830	1.00[AMR][1000 genomes]
rs7761857	1.00[AMR][1000 genomes]
rs9942427	1.00[AMR][1000 genomes]
rs9942477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131878400-131891600	Weak transcription	HepG2	liver
2	chr6:131883400-131914000	Weak transcription	Pancreas	Pancrea
3	chr6:131883800-131896000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:131886800-131899400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:131887000-131889600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:131887800-131910600	Weak transcription	Small Intestine	intestine
7	chr6:131888200-131903400	Weak transcription	Fetal Stomach	stomach
8	chr6:131888200-131908800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:131888400-131895600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:131888400-131897800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:131888400-131902000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:131888400-131902200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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