Variant report

Variant	rs9493182
Chromosome Location	chr6:132455495-132455496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:132455147-132455727	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr6:132451556-132457610	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr6:132454774-132455849	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr6:132454876-132455732	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr6:132451723-132457447	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr6:132451762-132455651	HUVEC	blood vessel:	n/a	n/a
7	FOS	chr6:132454891-132455523	HUVEC	blood vessel:	n/a	chr6:132455097-132455106 chr6:132455100-132455112

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132454814-132459405	GM12878	blood:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-4	chr6:132455412-132455623	XLOC_005465
2	lnc-ENPP1-4	chr6:132455412-132455623	XLOC_005465
3	lnc-ENPP1-4	chr6:132455118-132455623	XLOC_005465
4	lnc-ENPP1-4	chr6:132455412-132455620	XLOC_005465
5	lnc-ENPP1-4	chr6:132455412-132455623	XLOC_005465
6	lnc-ENPP1-4	chr6:132455412-132455623	XLOC_005465
7	lnc-ENPP1-4	chr6:132455412-132455623	XLOC_005465
8	lnc-ENPP1-4	chr6:132455412-132455623	XLOC_005465
9	lnc-ENPP1-4	chr6:132455118-132455623	XLOC_005465
10	lnc-ENPP1-4	chr6:132455118-132455623	ENSG00000228495
11	lnc-ENPP1-4	chr6:132455118-132455623	NONHSAT114951
12	lnc-ENPP1-4	chr6:132455118-132455623	NONHSAT114953

No data

Variant related genes	Relation type
LINC01013	TF binding region
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11154663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11758168	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1358771	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358772	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1358773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807982	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4897558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766161	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7761015	0.81[YRI][hapmap]
rs9493183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132450400-132456600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:132451000-132455600	Enhancers	Fetal Stomach	stomach
3	chr6:132451200-132455600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:132451400-132455600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:132451400-132455600	Enhancers	NHLF	lung
6	chr6:132451400-132456000	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:132451600-132455600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:132451600-132455600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:132451600-132455600	Enhancers	Adipose Nuclei	Adipose
10	chr6:132451800-132455600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:132451800-132455600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132452200-132456000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:132452400-132455600	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:132452600-132455600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:132452800-132455600	Enhancers	Brain Hippocampus Middle	brain
16	chr6:132452800-132455600	Enhancers	HSMM	muscle
17	chr6:132453000-132455600	Enhancers	Brain Anterior Caudate	brain
18	chr6:132453000-132455600	Enhancers	Brain Substantia Nigra	brain
19	chr6:132453000-132455800	Enhancers	Colon Smooth Muscle	Colon
20	chr6:132453000-132455800	Enhancers	NHDF-Ad	bronchial
21	chr6:132453200-132457800	Flanking Active TSS	HUVEC	blood vessel
22	chr6:132454400-132461000	Weak transcription	Aorta	Aorta
23	chr6:132455000-132455800	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr6:132455000-132456000	Flanking Active TSS	HSMMtube	muscle
25	chr6:132455200-132455600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:132455200-132455600	Enhancers	Right Atrium	heart
27	chr6:132455200-132455800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr6:132455200-132456000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:132455400-132455600	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:132455400-132455600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:132455400-132455600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:132455400-132455600	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr6:132455400-132455600	Enhancers	Left Ventricle	heart
34	chr6:132455400-132455600	Flanking Active TSS	Osteobl	bone
35	chr6:132455400-132455800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:132455400-132458200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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