Variant report

Variant	rs7761015
Chromosome Location	chr6:132507974-132507975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132506466-132514341	GM12878	blood:
2	6:132176847-132180372..6:132506466-132514341	GM12878	blood:
3	6:132182612-132191683..6:132506466-132514341	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10214443	1.00[EUR][1000 genomes]
rs12333213	1.00[EUR][1000 genomes]
rs1321271	1.00[EUR][1000 genomes]
rs1321273	1.00[EUR][1000 genomes]
rs2064771	1.00[EUR][1000 genomes]
rs2876172	1.00[EUR][1000 genomes]
rs57273539	1.00[EUR][1000 genomes]
rs61584962	1.00[EUR][1000 genomes]
rs6569775	1.00[EUR][1000 genomes]
rs6569776	1.00[EUR][1000 genomes]
rs6916021	1.00[EUR][1000 genomes]
rs6920169	1.00[EUR][1000 genomes]
rs6925799	1.00[EUR][1000 genomes]
rs6937406	1.00[EUR][1000 genomes]
rs6940428	1.00[EUR][1000 genomes]
rs6940609	1.00[EUR][1000 genomes]
rs6940746	1.00[EUR][1000 genomes]
rs6941580	1.00[EUR][1000 genomes]
rs73551712	1.00[EUR][1000 genomes]
rs73551713	1.00[EUR][1000 genomes]
rs7356898	1.00[EUR][1000 genomes]
rs7745229	1.00[EUR][1000 genomes]
rs7745523	1.00[EUR][1000 genomes]
rs7750036	0.84[AMR][1000 genomes]
rs7751452	1.00[EUR][1000 genomes]
rs7752512	0.83[EUR][1000 genomes]
rs7756259	0.83[EUR][1000 genomes]
rs7756584	1.00[EUR][1000 genomes]
rs7756735	0.83[EUR][1000 genomes]
rs7757338	1.00[EUR][1000 genomes]
rs7770249	0.84[AMR][1000 genomes]
rs7774777	1.00[EUR][1000 genomes]
rs9321327	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483389	1.00[EUR][1000 genomes]
rs9483391	1.00[EUR][1000 genomes]
rs9483392	1.00[EUR][1000 genomes]
rs9483393	1.00[EUR][1000 genomes]
rs9483394	1.00[EUR][1000 genomes]
rs9483397	1.00[EUR][1000 genomes]
rs9483400	1.00[EUR][1000 genomes]
rs9483404	1.00[EUR][1000 genomes]
rs9483407	1.00[EUR][1000 genomes]
rs9483410	0.84[AMR][1000 genomes]
rs9493182	0.81[YRI][hapmap]
rs9493183	0.82[YRI][hapmap]
rs9493189	1.00[EUR][1000 genomes]
rs9493191	1.00[EUR][1000 genomes]
rs9493192	1.00[EUR][1000 genomes]
rs9493193	1.00[EUR][1000 genomes]
rs9493194	1.00[EUR][1000 genomes]
rs9493195	1.00[EUR][1000 genomes]
rs9493197	1.00[EUR][1000 genomes]
rs9493201	1.00[EUR][1000 genomes]
rs9493202	1.00[EUR][1000 genomes]
rs9493203	1.00[EUR][1000 genomes]
rs9493204	1.00[EUR][1000 genomes]
rs9493205	0.80[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493207	1.00[EUR][1000 genomes]
rs9493210	1.00[EUR][1000 genomes]
rs9493213	1.00[EUR][1000 genomes]
rs9493214	0.83[EUR][1000 genomes]
rs9493215	1.00[EUR][1000 genomes]
rs9493216	1.00[EUR][1000 genomes]
rs9493217	0.83[EUR][1000 genomes]
rs9493219	1.00[EUR][1000 genomes]
rs9493220	1.00[EUR][1000 genomes]
rs9493221	1.00[EUR][1000 genomes]
rs9493222	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493223	1.00[EUR][1000 genomes]
rs9493226	1.00[EUR][1000 genomes]
rs9493227	1.00[EUR][1000 genomes]
rs9493231	0.84[AMR][1000 genomes]
rs9493232	0.84[AMR][1000 genomes]
rs9493233	0.80[AMR][1000 genomes]
rs9632501	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7761015	C9orf16	trans	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132486400-132509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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