Variant report

Variant	rs9483389
Chromosome Location	chr6:132468518-132468519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132182612-132191683..6:132459405-132471553	GM12878	blood:
2	6:132459405-132471553..6:132646256-132647474	Hela-S3	cervix:
3	6:132269655-132282174..6:132459405-132471553	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000079931	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10214443	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321271	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321273	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2064771	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876172	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57273539	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61584962	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569775	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569776	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916021	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6925799	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937406	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940428	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940609	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940746	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941580	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551712	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356898	1.00[EUR][1000 genomes]
rs7745229	1.00[EUR][1000 genomes]
rs7745523	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752512	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7756259	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7756584	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7757338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761015	1.00[EUR][1000 genomes]
rs7774777	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321327	1.00[EUR][1000 genomes]
rs9483391	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483392	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483393	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483394	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483400	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483404	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483407	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493189	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493195	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493197	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493201	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493202	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493203	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493204	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493205	1.00[EUR][1000 genomes]
rs9493207	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493210	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493214	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9493215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493216	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493217	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9493219	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493220	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493221	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493222	1.00[EUR][1000 genomes]
rs9493223	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493226	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493227	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9632501	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132467200-132470000	Strong transcription	HUVEC	blood vessel
3	chr6:132467400-132470000	Enhancers	NHDF-Ad	bronchial
4	chr6:132467600-132471000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132467800-132468600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:132467800-132470000	Enhancers	Osteobl	bone
7	chr6:132467800-132470200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132468000-132469800	Enhancers	NHLF	lung
9	chr6:132468000-132470000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:132468200-132468600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:132468200-132468800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:132468200-132469000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:132468200-132469200	Enhancers	Fetal Muscle Leg	muscle
14	chr6:132468200-132469400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:132468200-132469600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:132468200-132469800	Enhancers	Fetal Stomach	stomach
17	chr6:132468200-132469800	Enhancers	HSMMtube	muscle
18	chr6:132468200-132469800	Enhancers	NH-A	brain
19	chr6:132468400-132470000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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