Variant report

Variant	rs6925799
Chromosome Location	chr6:132467591-132467592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132182612-132191683..6:132459405-132471553	GM12878	blood:
2	6:132459405-132471553..6:132646256-132647474	Hela-S3	cervix:
3	6:132269655-132282174..6:132459405-132471553	H1-hESC	embryonic stem cell:	embryo

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-4	chr6:132467360-132468196	XLOC_005465
2	lnc-ENPP1-4	chr6:132467360-132468198	ENSG00000228495
3	lnc-ENPP1-4	chr6:132467360-132468510	NONHSAT114953

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10214443	1.00[EUR][1000 genomes]
rs12333213	1.00[EUR][1000 genomes]
rs1321271	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321273	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2064771	1.00[EUR][1000 genomes]
rs2876172	1.00[EUR][1000 genomes]
rs57273539	1.00[EUR][1000 genomes]
rs61584962	1.00[EUR][1000 genomes]
rs6569775	1.00[EUR][1000 genomes]
rs6569776	1.00[EUR][1000 genomes]
rs6916021	1.00[EUR][1000 genomes]
rs6920169	1.00[EUR][1000 genomes]
rs6937406	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940428	1.00[EUR][1000 genomes]
rs6940609	1.00[EUR][1000 genomes]
rs6940746	1.00[EUR][1000 genomes]
rs6941580	1.00[EUR][1000 genomes]
rs73551712	1.00[EUR][1000 genomes]
rs73551713	1.00[EUR][1000 genomes]
rs7356898	1.00[EUR][1000 genomes]
rs7745229	1.00[EUR][1000 genomes]
rs7745523	1.00[EUR][1000 genomes]
rs7751452	1.00[EUR][1000 genomes]
rs7752512	0.83[EUR][1000 genomes]
rs7756259	0.83[EUR][1000 genomes]
rs7756584	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756735	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7757338	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761015	1.00[EUR][1000 genomes]
rs7774777	1.00[EUR][1000 genomes]
rs9321327	1.00[EUR][1000 genomes]
rs9483389	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483391	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483392	1.00[EUR][1000 genomes]
rs9483393	1.00[EUR][1000 genomes]
rs9483394	1.00[EUR][1000 genomes]
rs9483397	1.00[EUR][1000 genomes]
rs9483400	1.00[EUR][1000 genomes]
rs9483404	1.00[EUR][1000 genomes]
rs9483407	1.00[EUR][1000 genomes]
rs9493189	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493191	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493192	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493193	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493194	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493195	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493197	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493201	1.00[EUR][1000 genomes]
rs9493202	1.00[EUR][1000 genomes]
rs9493203	1.00[EUR][1000 genomes]
rs9493204	1.00[EUR][1000 genomes]
rs9493205	1.00[EUR][1000 genomes]
rs9493207	1.00[EUR][1000 genomes]
rs9493210	1.00[EUR][1000 genomes]
rs9493213	1.00[EUR][1000 genomes]
rs9493214	0.83[EUR][1000 genomes]
rs9493215	1.00[EUR][1000 genomes]
rs9493216	1.00[EUR][1000 genomes]
rs9493217	0.83[EUR][1000 genomes]
rs9493219	1.00[EUR][1000 genomes]
rs9493220	1.00[EUR][1000 genomes]
rs9493221	1.00[EUR][1000 genomes]
rs9493222	1.00[EUR][1000 genomes]
rs9493223	1.00[EUR][1000 genomes]
rs9493226	1.00[EUR][1000 genomes]
rs9493227	1.00[EUR][1000 genomes]
rs9632501	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132464600-132468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132464600-132468200	Weak transcription	HSMMtube	muscle
4	chr6:132465000-132467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:132467200-132468200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132467200-132470000	Strong transcription	HUVEC	blood vessel
7	chr6:132467400-132467800	Weak transcription	Osteobl	bone
8	chr6:132467400-132470000	Enhancers	NHDF-Ad	bronchial

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