Variant report

Variant	rs7757338
Chromosome Location	chr6:132474150-132474151
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10214443	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321271	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2064771	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876172	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57273539	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61584962	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569775	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569776	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916021	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920169	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6925799	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937406	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940428	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940609	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940746	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941580	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551712	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551713	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356898	1.00[EUR][1000 genomes]
rs7745229	1.00[EUR][1000 genomes]
rs7745523	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752512	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7756259	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7756584	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7761015	1.00[EUR][1000 genomes]
rs7774777	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321327	1.00[EUR][1000 genomes]
rs9483366	1.00[JPT][hapmap]
rs9483389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483391	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483392	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483393	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483394	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483400	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483404	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483407	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493189	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493191	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493194	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493201	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493202	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493203	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493204	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493205	1.00[EUR][1000 genomes]
rs9493207	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493210	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493214	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9493215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493216	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493217	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9493219	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493220	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493221	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493222	1.00[EUR][1000 genomes]
rs9493223	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493226	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493227	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9632501	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132469600-132474200	Weak transcription	HSMM	muscle
3	chr6:132469800-132474400	Weak transcription	HSMMtube	muscle
4	chr6:132471800-132477200	Weak transcription	HUVEC	blood vessel
5	chr6:132473800-132474200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132473800-132474200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132473800-132474600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132474000-132474200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132474000-132474200	Enhancers	NHDF-Ad	bronchial
10	chr6:132474000-132474600	Enhancers	Osteobl	bone
11	chr6:132474000-132475000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:132474000-132475200	Enhancers	NH-A	brain

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