Variant report

Variant	rs7770249
Chromosome Location	chr6:132512993-132512994
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs6929585	1.00[EUR][1000 genomes]
rs7750036	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761015	0.84[AMR][1000 genomes]
rs9321327	0.90[AMR][1000 genomes]
rs9483395	1.00[EUR][1000 genomes]
rs9483409	1.00[EUR][1000 genomes]
rs9483410	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493202	1.00[TSI][hapmap]
rs9493205	0.90[AMR][1000 genomes]
rs9493222	0.90[AMR][1000 genomes]
rs9493230	0.82[ASW][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs9493231	0.94[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493232	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493233	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493235	1.00[EUR][1000 genomes]
rs9632501	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132508400-132513400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132509600-132514200	Enhancers	Osteobl	bone
3	chr6:132509600-132514600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:132509800-132513000	Enhancers	NHDF-Ad	bronchial
5	chr6:132510000-132513000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:132510200-132513400	Enhancers	NHLF	lung
7	chr6:132511400-132513000	Enhancers	HSMMtube	muscle
8	chr6:132511600-132514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:132512000-132513000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:132512000-132514000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:132512000-132523800	Weak transcription	Aorta	Aorta
12	chr6:132512200-132520000	Weak transcription	HMEC	breast
13	chr6:132512600-132513000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:132512800-132513000	Weak transcription	Small Intestine	intestine
15	chr6:132512800-132514000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:132512800-132514000	Weak transcription	HSMM	muscle
17	chr6:132512800-132519600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links