Variant report

Variant	rs9493235
Chromosome Location	chr6:132523203-132523204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12333213	0.83[AMR][1000 genomes]
rs2064771	0.83[AMR][1000 genomes]
rs2876172	0.83[AMR][1000 genomes]
rs57273539	0.83[AMR][1000 genomes]
rs61584962	0.83[AMR][1000 genomes]
rs6569775	0.83[AMR][1000 genomes]
rs6569776	0.83[AMR][1000 genomes]
rs6916021	0.83[AMR][1000 genomes]
rs6920169	0.83[AMR][1000 genomes]
rs6929585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940428	0.83[AMR][1000 genomes]
rs6940609	0.83[AMR][1000 genomes]
rs6940746	0.83[AMR][1000 genomes]
rs6941580	0.83[AMR][1000 genomes]
rs73551712	0.83[AMR][1000 genomes]
rs73551713	0.83[AMR][1000 genomes]
rs7745523	0.83[AMR][1000 genomes]
rs7750036	1.00[EUR][1000 genomes]
rs7751452	0.83[AMR][1000 genomes]
rs7752512	0.83[AMR][1000 genomes]
rs7770249	1.00[EUR][1000 genomes]
rs7774777	0.83[AMR][1000 genomes]
rs9483392	0.83[AMR][1000 genomes]
rs9483393	0.83[AMR][1000 genomes]
rs9483394	0.83[AMR][1000 genomes]
rs9483395	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483397	0.83[AMR][1000 genomes]
rs9483400	0.83[AMR][1000 genomes]
rs9483404	0.83[AMR][1000 genomes]
rs9483407	0.83[AMR][1000 genomes]
rs9483409	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483410	1.00[EUR][1000 genomes]
rs9493201	0.83[AMR][1000 genomes]
rs9493202	0.83[AMR][1000 genomes]
rs9493203	0.83[AMR][1000 genomes]
rs9493204	0.83[AMR][1000 genomes]
rs9493207	0.83[AMR][1000 genomes]
rs9493210	0.83[AMR][1000 genomes]
rs9493213	0.83[AMR][1000 genomes]
rs9493214	0.83[AMR][1000 genomes]
rs9493215	0.83[AMR][1000 genomes]
rs9493216	0.83[AMR][1000 genomes]
rs9493217	0.83[AMR][1000 genomes]
rs9493219	0.83[AMR][1000 genomes]
rs9493220	0.83[AMR][1000 genomes]
rs9493221	0.83[AMR][1000 genomes]
rs9493223	0.83[AMR][1000 genomes]
rs9493226	0.83[AMR][1000 genomes]
rs9493227	0.83[AMR][1000 genomes]
rs9493230	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493231	1.00[EUR][1000 genomes]
rs9493232	1.00[EUR][1000 genomes]
rs9493233	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132512000-132523800	Weak transcription	Aorta	Aorta
2	chr6:132519600-132530600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:132520800-132523600	Weak transcription	Small Intestine	intestine
4	chr6:132521200-132523400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:132521200-132523800	Weak transcription	HSMMtube	muscle
6	chr6:132521400-132523600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132521400-132523800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:132521400-132523800	Weak transcription	Fetal Stomach	stomach
9	chr6:132522600-132525000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132522800-132524000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132523000-132524600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:132523000-132524600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:132523000-132524600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:132523000-132524600	Enhancers	NHDF-Ad	bronchial
15	chr6:132523000-132524800	Enhancers	Fetal Muscle Leg	muscle
16	chr6:132523200-132523600	Weak transcription	NHLF	lung
17	chr6:132523200-132523800	Enhancers	Fetal Intestine Small	intestine
18	chr6:132523200-132524000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:132523200-132524400	Enhancers	Adipose Nuclei	Adipose
20	chr6:132523200-132524400	Enhancers	HSMM	muscle
21	chr6:132523200-132524400	Enhancers	Osteobl	bone
22	chr6:132523200-132524600	Enhancers	Muscle Satellite Cultured Cells	--

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