Variant report
Variant | rs9483395 |
---|---|
Chromosome Location | chr6:132486405-132486406 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ENPP1-4 | chr6:132485037-132486685 | NONHSAT114953 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12333213 | 0.83[AMR][1000 genomes] |
rs2064771 | 0.83[AMR][1000 genomes] |
rs2876172 | 0.83[AMR][1000 genomes] |
rs57273539 | 0.83[AMR][1000 genomes] |
rs61584962 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6569775 | 0.83[AMR][1000 genomes] |
rs6569776 | 0.83[AMR][1000 genomes] |
rs6916021 | 0.83[AMR][1000 genomes] |
rs6920169 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6929585 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6940428 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6940609 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6940746 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6941580 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73551712 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73551713 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs7745523 | 0.83[AMR][1000 genomes] |
rs7750036 | 1.00[EUR][1000 genomes] |
rs7751452 | 0.83[AMR][1000 genomes] |
rs7752512 | 0.83[AMR][1000 genomes] |
rs7770249 | 1.00[EUR][1000 genomes] |
rs7774777 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs9483392 | 0.83[AMR][1000 genomes] |
rs9483393 | 0.83[AMR][1000 genomes] |
rs9483394 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs9483397 | 0.83[AMR][1000 genomes] |
rs9483400 | 0.83[AMR][1000 genomes] |
rs9483404 | 0.83[AMR][1000 genomes] |
rs9483407 | 0.83[AMR][1000 genomes] |
rs9483409 | 0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9483410 | 1.00[EUR][1000 genomes] |
rs9493201 | 0.83[AMR][1000 genomes] |
rs9493202 | 0.83[AMR][1000 genomes] |
rs9493203 | 0.83[AMR][1000 genomes] |
rs9493204 | 0.83[AMR][1000 genomes] |
rs9493207 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs9493210 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs9493213 | 0.83[AMR][1000 genomes] |
rs9493214 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs9493215 | 0.83[AMR][1000 genomes] |
rs9493216 | 0.83[AMR][1000 genomes] |
rs9493217 | 0.83[AMR][1000 genomes] |
rs9493219 | 0.83[AMR][1000 genomes] |
rs9493220 | 0.83[AMR][1000 genomes] |
rs9493221 | 0.83[AMR][1000 genomes] |
rs9493223 | 0.83[AMR][1000 genomes] |
rs9493226 | 0.83[AMR][1000 genomes] |
rs9493227 | 0.83[AMR][1000 genomes] |
rs9493230 | 0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9493231 | 1.00[EUR][1000 genomes] |
rs9493232 | 1.00[EUR][1000 genomes] |
rs9493233 | 1.00[EUR][1000 genomes] |
rs9493235 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:132459600-132494800 | Weak transcription | Primary B cells from cord blood | blood |
2 | chr6:132482600-132488800 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
3 | chr6:132482600-132489400 | Weak transcription | Aorta | Aorta |
4 | chr6:132486200-132487000 | ZNF genes & repeats | HUVEC | blood vessel |
5 | chr6:132486400-132509800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |