Variant report

Variant	rs6929585
Chromosome Location	chr6:132486382-132486383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-4	chr6:132485037-132486685	NONHSAT114953

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12333213	0.83[AMR][1000 genomes]
rs2064771	0.83[AMR][1000 genomes]
rs2876172	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57273539	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61584962	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6569775	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6569776	0.83[AMR][1000 genomes]
rs6916021	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6920169	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940428	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940609	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940746	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6941580	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73551712	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73551713	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745523	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7750036	1.00[EUR][1000 genomes]
rs7751452	0.83[AMR][1000 genomes]
rs7752512	0.83[AMR][1000 genomes]
rs7770249	1.00[EUR][1000 genomes]
rs7774777	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9321326	0.81[AFR][1000 genomes]
rs9483392	0.83[AMR][1000 genomes]
rs9483393	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9483394	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9483395	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483397	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9483400	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9483404	0.83[AMR][1000 genomes]
rs9483407	0.83[AMR][1000 genomes]
rs9483409	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483410	1.00[EUR][1000 genomes]
rs9493201	0.83[AMR][1000 genomes]
rs9493202	0.83[AMR][1000 genomes]
rs9493203	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493204	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493207	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493210	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493213	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493214	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493215	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493216	0.83[AMR][1000 genomes]
rs9493217	0.83[AMR][1000 genomes]
rs9493219	0.83[AMR][1000 genomes]
rs9493220	0.83[AMR][1000 genomes]
rs9493221	0.83[AMR][1000 genomes]
rs9493223	0.83[AMR][1000 genomes]
rs9493226	0.83[AMR][1000 genomes]
rs9493227	0.83[AMR][1000 genomes]
rs9493230	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493231	1.00[EUR][1000 genomes]
rs9493232	1.00[EUR][1000 genomes]
rs9493233	1.00[EUR][1000 genomes]
rs9493235	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132482600-132488800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:132482600-132489400	Weak transcription	Aorta	Aorta
4	chr6:132486200-132487000	ZNF genes & repeats	HUVEC	blood vessel

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