Variant report

Variant	rs9493190
Chromosome Location	chr6:132468656-132468657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132182612-132191683..6:132459405-132471553	GM12878	blood:
2	6:132459405-132471553..6:132646256-132647474	Hela-S3	cervix:
3	6:132269655-132282174..6:132459405-132471553	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9483398	1.00[AFR][1000 genomes]
rs9483399	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132467200-132470000	Strong transcription	HUVEC	blood vessel
3	chr6:132467400-132470000	Enhancers	NHDF-Ad	bronchial
4	chr6:132467600-132471000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132467800-132470000	Enhancers	Osteobl	bone
6	chr6:132467800-132470200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132468000-132469800	Enhancers	NHLF	lung
8	chr6:132468000-132470000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:132468200-132468800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:132468200-132469000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:132468200-132469200	Enhancers	Fetal Muscle Leg	muscle
12	chr6:132468200-132469400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:132468200-132469600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:132468200-132469800	Enhancers	Fetal Stomach	stomach
15	chr6:132468200-132469800	Enhancers	HSMMtube	muscle
16	chr6:132468200-132469800	Enhancers	NH-A	brain
17	chr6:132468400-132470000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:132468600-132469000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr6:132468600-132469200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:132468600-132469200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:132468600-132469600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:132468600-132469600	Enhancers	HSMM	muscle
23	chr6:132468600-132470000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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