Variant report

Variant	rs9483398
Chromosome Location	chr6:132496511-132496512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13437273	1.00[YRI][hapmap]
rs17061183	1.00[EUR][1000 genomes]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs7357019	1.00[YRI][hapmap]
rs73779072	1.00[EUR][1000 genomes]
rs9483381	1.00[YRI][hapmap]
rs9483399	1.00[AFR][1000 genomes]
rs9493190	1.00[AFR][1000 genomes]
rs9493234	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9493246	1.00[YRI][hapmap]
rs9493249	1.00[YRI][hapmap]
rs9493252	1.00[YRI][hapmap]
rs9493254	1.00[YRI][hapmap]
rs9493260	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132486400-132509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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