Variant report

Variant	rs56955954
Chromosome Location	chr6:132678621-132678622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061183	1.00[EUR][1000 genomes]
rs2788953	1.00[EUR][1000 genomes]
rs55998613	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58668069	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	1.00[EUR][1000 genomes]
rs6919457	1.00[EUR][1000 genomes]
rs6921065	1.00[EUR][1000 genomes]
rs6929361	1.00[EUR][1000 genomes]
rs6929722	1.00[EUR][1000 genomes]
rs6929875	1.00[EUR][1000 genomes]
rs6934675	1.00[EUR][1000 genomes]
rs6935405	1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	1.00[EUR][1000 genomes]
rs73779072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	1.00[EUR][1000 genomes]
rs7745417	1.00[EUR][1000 genomes]
rs7751015	1.00[EUR][1000 genomes]
rs7751258	1.00[EUR][1000 genomes]
rs7754662	1.00[EUR][1000 genomes]
rs7765354	1.00[EUR][1000 genomes]
rs7766824	1.00[EUR][1000 genomes]
rs7770893	1.00[EUR][1000 genomes]
rs7772457	1.00[EUR][1000 genomes]
rs7772611	1.00[EUR][1000 genomes]
rs7772758	1.00[EUR][1000 genomes]
rs9483398	1.00[EUR][1000 genomes]
rs9493234	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus
2	chr6:132676400-132681800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:132676400-132686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132676600-132681400	Weak transcription	Fetal Stomach	stomach
5	chr6:132676600-132682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:132677200-132679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132677200-132688600	Weak transcription	Osteobl	bone
8	chr6:132677400-132680200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:132677400-132681000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132677400-132681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132677400-132701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:132677600-132679000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:132677600-132679200	Enhancers	Primary B cells from cord blood	blood
14	chr6:132677600-132681200	Weak transcription	Fetal Lung	lung
15	chr6:132678000-132679400	Enhancers	HUVEC	blood vessel
16	chr6:132678200-132679400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:132678200-132679600	Enhancers	NHDF-Ad	bronchial
18	chr6:132678400-132678800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:132678400-132679200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:132678400-132681400	Weak transcription	Fetal Kidney	kidney
21	chr6:132678600-132681800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:132678600-132690400	Weak transcription	NH-A	brain

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