Variant report

Variant	rs7754662
Chromosome Location	chr6:132811261-132811262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132805415..132808121-chr6:132809363..132812298,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061183	1.00[EUR][1000 genomes]
rs2788953	1.00[EUR][1000 genomes]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6919457	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6921065	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929361	1.00[EUR][1000 genomes]
rs6929722	1.00[EUR][1000 genomes]
rs6929875	1.00[EUR][1000 genomes]
rs6934675	1.00[EUR][1000 genomes]
rs6935405	1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73779072	1.00[EUR][1000 genomes]
rs73780059	1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7745417	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751015	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751258	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765354	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7766824	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7770893	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772457	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772611	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772758	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9483483	1.00[EUR][1000 genomes]
rs9493386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
2	chr6:132787200-132811800	Weak transcription	Colonic Mucosa	Colon
3	chr6:132791200-132813000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132791800-132814800	Weak transcription	HSMMtube	muscle
7	chr6:132793200-132811800	Weak transcription	Small Intestine	intestine
8	chr6:132793200-132814800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:132793200-132818000	Weak transcription	HepG2	liver
10	chr6:132793600-132812400	Weak transcription	NH-A	brain
11	chr6:132794000-132811800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:132800000-132812400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:132800800-132812600	Weak transcription	K562	blood
14	chr6:132802200-132811600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:132803200-132811400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:132804000-132811600	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:132804400-132814600	Weak transcription	Fetal Lung	lung
18	chr6:132804400-132820800	Weak transcription	Fetal Stomach	stomach
19	chr6:132804800-132813600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:132805400-132812400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:132805400-132813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:132805400-132814200	Weak transcription	Fetal Kidney	kidney
23	chr6:132805400-132818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:132805400-132819000	Weak transcription	HMEC	breast
25	chr6:132805400-132820000	Weak transcription	Liver	Liver
26	chr6:132805400-132822400	Weak transcription	NHEK	skin
27	chr6:132805800-132812000	Weak transcription	Ovary	ovary
28	chr6:132805800-132815600	Weak transcription	HSMM	muscle
29	chr6:132805800-132822600	Weak transcription	NHLF	lung
30	chr6:132806000-132812600	Weak transcription	Fetal Heart	heart
31	chr6:132808200-132811600	Weak transcription	Fetal Intestine Large	intestine
32	chr6:132809000-132812000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:132809400-132811400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:132809800-132813400	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:132810000-132811400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:132810000-132811400	Enhancers	Brain Hippocampus Middle	brain
37	chr6:132810000-132813600	Enhancers	Left Ventricle	heart
38	chr6:132810000-132814800	Strong transcription	Fetal Intestine Small	intestine
39	chr6:132810200-132811800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:132810200-132811800	Weak transcription	Gastric	stomach
41	chr6:132810600-132811400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:132810600-132811400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:132810600-132811400	Enhancers	Psoas Muscle	Psoas
44	chr6:132810600-132811400	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:132810600-132811400	Enhancers	HUVEC	blood vessel
46	chr6:132810600-132811600	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr6:132810600-132811800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:132810600-132812200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:132810600-132813000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr6:132810600-132813200	Enhancers	Aorta	Aorta

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