Variant report
| Variant | rs6935405 |
|---|---|
| Chromosome Location | chr6:132852940-132852941 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112306 | Chromatin interaction |
| ENSG00000079950 | Chromatin interaction |
| ENSG00000206754 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs17061204 | 1.00[TSI][hapmap] |
| rs2788953 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55998613 | 1.00[EUR][1000 genomes] |
| rs56955954 | 1.00[EUR][1000 genomes] |
| rs58668069 | 1.00[EUR][1000 genomes] |
| rs59610715 | 1.00[EUR][1000 genomes] |
| rs6901217 | 1.00[EUR][1000 genomes] |
| rs6919457 | 1.00[EUR][1000 genomes] |
| rs6921065 | 1.00[EUR][1000 genomes] |
| rs6929361 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6929722 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6929875 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6934675 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6936245 | 1.00[EUR][1000 genomes] |
| rs6936426 | 1.00[EUR][1000 genomes] |
| rs6942075 | 1.00[EUR][1000 genomes] |
| rs73779072 | 1.00[EUR][1000 genomes] |
| rs73780059 | 1.00[EUR][1000 genomes] |
| rs73780062 | 1.00[EUR][1000 genomes] |
| rs7745091 | 1.00[EUR][1000 genomes] |
| rs7745417 | 1.00[EUR][1000 genomes] |
| rs7751015 | 1.00[EUR][1000 genomes] |
| rs7751258 | 1.00[EUR][1000 genomes] |
| rs7754662 | 1.00[EUR][1000 genomes] |
| rs7765354 | 1.00[EUR][1000 genomes] |
| rs7766824 | 1.00[EUR][1000 genomes] |
| rs7770893 | 1.00[EUR][1000 genomes] |
| rs7772457 | 1.00[EUR][1000 genomes] |
| rs7772611 | 1.00[EUR][1000 genomes] |
| rs7772758 | 1.00[EUR][1000 genomes] |
| rs9483483 | 1.00[EUR][1000 genomes] |
| rs9493330 | 1.00[TSI][hapmap] |
| rs9493334 | 1.00[TSI][hapmap] |
| rs9493386 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132851800-132854800 | Weak transcription | HepG2 | liver |
| 2 | chr6:132851800-132855800 | Weak transcription | Psoas Muscle | Psoas |
