Variant report

Variant	rs6901217
Chromosome Location	chr6:132803141-132803142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132600764..132601683-chr6:132802349..132803310,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061183	1.00[EUR][1000 genomes]
rs2788953	1.00[EUR][1000 genomes]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6919457	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6921065	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929361	1.00[EUR][1000 genomes]
rs6929722	1.00[EUR][1000 genomes]
rs6929875	1.00[EUR][1000 genomes]
rs6934675	1.00[EUR][1000 genomes]
rs6935405	1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73779072	1.00[EUR][1000 genomes]
rs73780059	1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7745417	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751015	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751258	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7754662	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765354	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7766824	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7770893	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772457	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772611	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772758	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9483483	1.00[EUR][1000 genomes]
rs9493386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132778200-132810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
3	chr6:132785200-132811200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:132786200-132805200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:132787200-132811800	Weak transcription	Colonic Mucosa	Colon
6	chr6:132787600-132804800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132788400-132804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:132789400-132811000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:132789600-132804600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:132789600-132804800	Weak transcription	HUVEC	blood vessel
11	chr6:132790400-132804800	Weak transcription	HMEC	breast
12	chr6:132791000-132811200	Weak transcription	Fetal Brain Female	brain
13	chr6:132791200-132803800	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:132791200-132803800	Weak transcription	NHLF	lung
15	chr6:132791200-132809000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:132791200-132810600	Weak transcription	Aorta	Aorta
17	chr6:132791200-132810600	Weak transcription	Lung	lung
18	chr6:132791200-132811200	Weak transcription	Pancreas	Pancrea
19	chr6:132791200-132813000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
21	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:132791400-132803400	Weak transcription	Fetal Kidney	kidney
23	chr6:132791400-132804800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:132791800-132814800	Weak transcription	HSMMtube	muscle
25	chr6:132793000-132803800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:132793200-132811800	Weak transcription	Small Intestine	intestine
27	chr6:132793200-132814800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:132793200-132818000	Weak transcription	HepG2	liver
29	chr6:132793600-132804800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:132793600-132805000	Weak transcription	Liver	Liver
31	chr6:132793600-132805200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:132793600-132811200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:132793600-132812400	Weak transcription	NH-A	brain
34	chr6:132794000-132803400	Weak transcription	NHDF-Ad	bronchial
35	chr6:132794000-132810800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:132794000-132811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:132794000-132811800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:132794200-132804800	Weak transcription	HSMM	muscle
39	chr6:132794200-132810000	Weak transcription	Left Ventricle	heart
40	chr6:132794400-132803800	Weak transcription	Fetal Stomach	stomach
41	chr6:132794600-132811200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:132794800-132811200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr6:132795000-132805800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:132795200-132811200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:132795400-132807800	Weak transcription	Fetal Intestine Small	intestine
46	chr6:132796600-132810600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:132798200-132803800	Weak transcription	Fetal Lung	lung
48	chr6:132798400-132805000	Weak transcription	Osteobl	bone
49	chr6:132799400-132806200	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr6:132799400-132810600	Genic enhancers	Primary B cells from cord blood	blood

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