Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:132832536..132835308-chr6:132850516..132853191,2	MCF-7	breast:
2	chr6:132849284..132852259-chr6:133140271..133142677,3	MCF-7	breast:
3	chr6:132165848..132168401-chr6:132849433..132851521,2	K562	blood:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	1.00[EUR][1000 genomes]
rs6919457	1.00[EUR][1000 genomes]
rs6921065	1.00[EUR][1000 genomes]
rs6929361	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929722	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	1.00[EUR][1000 genomes]
rs73779072	1.00[EUR][1000 genomes]
rs73780059	1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	1.00[EUR][1000 genomes]
rs7745417	1.00[EUR][1000 genomes]
rs7751015	1.00[EUR][1000 genomes]
rs7751258	1.00[EUR][1000 genomes]
rs7754662	1.00[EUR][1000 genomes]
rs7765354	1.00[EUR][1000 genomes]
rs7766824	1.00[EUR][1000 genomes]
rs7770893	1.00[EUR][1000 genomes]
rs7772457	1.00[EUR][1000 genomes]
rs7772611	1.00[EUR][1000 genomes]
rs7772758	1.00[EUR][1000 genomes]
rs9483483	1.00[EUR][1000 genomes]
rs9493386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132843400-132851200	Weak transcription	Osteobl	bone
2	chr6:132848000-132851400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:132848200-132851200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:132848200-132851400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:132849000-132851400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:132850800-132851200	Bivalent Enhancer	HepG2	liver
7	chr6:132850800-132851400	Enhancers	Placenta	Placenta

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