Variant report

Variant	rs7766824
Chromosome Location	chr6:132809855-132809856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132805415..132808121-chr6:132809363..132812298,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061183	1.00[EUR][1000 genomes]
rs2788953	1.00[EUR][1000 genomes]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6919457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6921065	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929361	1.00[EUR][1000 genomes]
rs6929722	1.00[EUR][1000 genomes]
rs6929875	1.00[EUR][1000 genomes]
rs6934675	1.00[EUR][1000 genomes]
rs6935405	1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73779072	1.00[EUR][1000 genomes]
rs73780059	1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7745417	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751015	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751258	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7754662	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765354	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7770893	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772457	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772611	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772758	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9483483	1.00[EUR][1000 genomes]
rs9493386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	esv3395204	chr6:132809604-132810080	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132778200-132810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
3	chr6:132785200-132811200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:132787200-132811800	Weak transcription	Colonic Mucosa	Colon
5	chr6:132789400-132811000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:132791000-132811200	Weak transcription	Fetal Brain Female	brain
7	chr6:132791200-132810600	Weak transcription	Aorta	Aorta
8	chr6:132791200-132810600	Weak transcription	Lung	lung
9	chr6:132791200-132811200	Weak transcription	Pancreas	Pancrea
10	chr6:132791200-132813000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
12	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:132791800-132814800	Weak transcription	HSMMtube	muscle
14	chr6:132793200-132811800	Weak transcription	Small Intestine	intestine
15	chr6:132793200-132814800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:132793200-132818000	Weak transcription	HepG2	liver
17	chr6:132793600-132811200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:132793600-132812400	Weak transcription	NH-A	brain
19	chr6:132794000-132810800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:132794000-132811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:132794000-132811800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:132794200-132810000	Weak transcription	Left Ventricle	heart
23	chr6:132794600-132811200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:132794800-132811200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:132795200-132811200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:132796600-132810600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:132799400-132810600	Genic enhancers	Primary B cells from cord blood	blood
28	chr6:132800000-132812400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:132800800-132812600	Weak transcription	K562	blood
30	chr6:132801800-132810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:132802000-132811000	Weak transcription	Primary T cells from cord blood	blood
32	chr6:132802000-132811200	Weak transcription	Placenta	Placenta
33	chr6:132802200-132811600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:132802600-132810400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:132802600-132811200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:132803200-132811400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:132804000-132811600	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:132804400-132814600	Weak transcription	Fetal Lung	lung
39	chr6:132804400-132820800	Weak transcription	Fetal Stomach	stomach
40	chr6:132804800-132810800	Weak transcription	Adipose Nuclei	Adipose
41	chr6:132804800-132813600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:132805000-132810600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:132805200-132810600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:132805400-132810600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:132805400-132810600	Weak transcription	Brain Angular Gyrus	brain
46	chr6:132805400-132810600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:132805400-132810600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:132805400-132810600	Weak transcription	HUVEC	blood vessel
49	chr6:132805400-132810600	Weak transcription	Osteobl	bone
50	chr6:132805400-132811000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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