Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52349507..52351793-chr6:132662386..132665362,2	MCF-7	breast:
2	chr6:132649643..132651250-chr6:132662888..132664788,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061183	1.00[EUR][1000 genomes]
rs2788953	1.00[EUR][1000 genomes]
rs56955954	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58668069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	1.00[EUR][1000 genomes]
rs6919457	1.00[EUR][1000 genomes]
rs6921065	1.00[EUR][1000 genomes]
rs6929361	1.00[EUR][1000 genomes]
rs6929722	1.00[EUR][1000 genomes]
rs6929875	1.00[EUR][1000 genomes]
rs6934675	1.00[EUR][1000 genomes]
rs6935405	1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	1.00[EUR][1000 genomes]
rs73779072	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780059	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	1.00[EUR][1000 genomes]
rs7745417	1.00[EUR][1000 genomes]
rs7751015	1.00[EUR][1000 genomes]
rs7751258	1.00[EUR][1000 genomes]
rs7754662	1.00[EUR][1000 genomes]
rs7765354	1.00[EUR][1000 genomes]
rs7766824	1.00[EUR][1000 genomes]
rs7770893	1.00[EUR][1000 genomes]
rs7772457	1.00[EUR][1000 genomes]
rs7772611	1.00[EUR][1000 genomes]
rs7772758	1.00[EUR][1000 genomes]
rs9483398	1.00[EUR][1000 genomes]
rs9493234	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
2	chr6:132652000-132665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:132656000-132665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132656000-132676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:132656400-132665600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:132656800-132675400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:132656800-132676000	Weak transcription	NHDF-Ad	bronchial
8	chr6:132658200-132674000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:132658200-132674800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:132662800-132665800	Weak transcription	Osteobl	bone
11	chr6:132662800-132669200	Weak transcription	Fetal Kidney	kidney
12	chr6:132663000-132665400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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