Variant report

Variant	rs17061183
Chromosome Location	chr6:132644044-132644045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132232580-132243347..6:132641847-132646256	GM12878	blood:
2	6:132282174-132286019..6:132641847-132646256	GM12878	blood:
3	6:132218210-132218634..6:132641847-132646256	H1-hESC	embryonic stem cell:	embryo
4	6:132243347-132257249..6:132641847-132646256	Hela-S3	cervix:
5	6:132317180-132317980..6:132641847-132646256	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	1.00[EUR][1000 genomes]
rs6919457	1.00[EUR][1000 genomes]
rs6921065	1.00[EUR][1000 genomes]
rs6942075	1.00[EUR][1000 genomes]
rs73779072	1.00[EUR][1000 genomes]
rs73780059	1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745091	1.00[EUR][1000 genomes]
rs7745417	1.00[EUR][1000 genomes]
rs7751015	1.00[EUR][1000 genomes]
rs7751258	1.00[EUR][1000 genomes]
rs7754662	1.00[EUR][1000 genomes]
rs7765354	1.00[EUR][1000 genomes]
rs7766824	1.00[EUR][1000 genomes]
rs7770893	1.00[EUR][1000 genomes]
rs7772457	1.00[EUR][1000 genomes]
rs7772611	1.00[EUR][1000 genomes]
rs7772758	1.00[EUR][1000 genomes]
rs9483398	1.00[EUR][1000 genomes]
rs9493234	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
2	chr6:132635600-132655000	Weak transcription	NH-A	brain
3	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
5	chr6:132639000-132648800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:132639000-132651200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:132639400-132644400	Strong transcription	Fetal Lung	lung
8	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:132643000-132644600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:132643000-132644600	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:132643000-132645200	Enhancers	Osteobl	bone
12	chr6:132643400-132644600	Genic enhancers	NHDF-Ad	bronchial
13	chr6:132643600-132645200	Enhancers	NHLF	lung
14	chr6:132643800-132644200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:132643800-132644200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:132643800-132644200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:132643800-132644200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:132643800-132644200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:132643800-132644200	Enhancers	HSMMtube	muscle
20	chr6:132643800-132644400	Active TSS	NHEK	skin
21	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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