Variant report

Variant	rs7745091
Chromosome Location	chr6:132813248-132813249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132812441..132815118-chr6:132816050..132818688,2	K562	blood:
2	chr6:132812031..132814211-chr6:133136087..133138288,2	MCF-7	breast:
3	chr6:132811435..132814144-chr6:132814789..132817524,2	K562	blood:

Variant related genes	Relation type
ENSG00000206754	Chromatin interaction
ENSG00000221500	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061183	1.00[EUR][1000 genomes]
rs2788953	1.00[EUR][1000 genomes]
rs55998613	1.00[EUR][1000 genomes]
rs56955954	1.00[EUR][1000 genomes]
rs58668069	1.00[EUR][1000 genomes]
rs59610715	1.00[EUR][1000 genomes]
rs6901217	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6919457	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6921065	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929361	1.00[EUR][1000 genomes]
rs6929722	1.00[EUR][1000 genomes]
rs6929875	1.00[EUR][1000 genomes]
rs6934675	1.00[EUR][1000 genomes]
rs6935405	1.00[EUR][1000 genomes]
rs6936245	1.00[EUR][1000 genomes]
rs6936426	1.00[EUR][1000 genomes]
rs6942075	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73779072	1.00[EUR][1000 genomes]
rs73780059	1.00[EUR][1000 genomes]
rs73780062	1.00[EUR][1000 genomes]
rs7745417	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751015	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751258	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7754662	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765354	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7766824	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7770893	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772457	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772611	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772758	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9483483	1.00[EUR][1000 genomes]
rs9493386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
2	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132791800-132814800	Weak transcription	HSMMtube	muscle
5	chr6:132793200-132814800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:132793200-132818000	Weak transcription	HepG2	liver
7	chr6:132804400-132814600	Weak transcription	Fetal Lung	lung
8	chr6:132804400-132820800	Weak transcription	Fetal Stomach	stomach
9	chr6:132804800-132813600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:132805400-132813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:132805400-132814200	Weak transcription	Fetal Kidney	kidney
12	chr6:132805400-132818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:132805400-132819000	Weak transcription	HMEC	breast
14	chr6:132805400-132820000	Weak transcription	Liver	Liver
15	chr6:132805400-132822400	Weak transcription	NHEK	skin
16	chr6:132805800-132815600	Weak transcription	HSMM	muscle
17	chr6:132805800-132822600	Weak transcription	NHLF	lung
18	chr6:132809800-132813400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr6:132810000-132813600	Enhancers	Left Ventricle	heart
20	chr6:132810000-132814800	Strong transcription	Fetal Intestine Small	intestine
21	chr6:132810600-132813400	Enhancers	Brain Angular Gyrus	brain
22	chr6:132810600-132813400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:132810600-132813400	Enhancers	Brain Substantia Nigra	brain
24	chr6:132810600-132813400	Enhancers	Spleen	Spleen
25	chr6:132810600-132813600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:132810600-132813600	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:132810600-132813600	Enhancers	Lung	lung
28	chr6:132810800-132813400	Enhancers	Right Ventricle	heart
29	chr6:132810800-132813600	Enhancers	Adipose Nuclei	Adipose
30	chr6:132811000-132820400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:132811200-132813400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:132811200-132813400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:132811200-132813400	Enhancers	Pancreas	Pancrea
34	chr6:132811200-132813400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:132811200-132813600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:132811400-132813400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:132811400-132813600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:132811400-132815800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:132811600-132813400	Enhancers	Brain Hippocampus Middle	brain
40	chr6:132811600-132813600	Enhancers	Right Atrium	heart
41	chr6:132811600-132815800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:132811600-132826000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:132811800-132813400	Enhancers	Gastric	stomach
45	chr6:132811800-132814200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:132811800-132814600	Weak transcription	Dnd41	blood
47	chr6:132811800-132816400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:132812000-132813400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:132812000-132813400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr6:132812000-132813400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links