Variant report

Variant	rs9493334
Chromosome Location	chr6:132815203-132815204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132811435..132814144-chr6:132814789..132817524,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12333184	1.00[EUR][1000 genomes]
rs17061204	1.00[TSI][hapmap]
rs55842913	1.00[EUR][1000 genomes]
rs55845566	1.00[EUR][1000 genomes]
rs57190537	1.00[EUR][1000 genomes]
rs57791045	1.00[EUR][1000 genomes]
rs61306520	1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs6935405	1.00[TSI][hapmap]
rs73544073	1.00[EUR][1000 genomes]
rs73544079	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[EUR][1000 genomes]
rs7356940	1.00[EUR][1000 genomes]
rs73772503	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772506	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772509	1.00[EUR][1000 genomes]
rs73772522	1.00[EUR][1000 genomes]
rs73772526	1.00[EUR][1000 genomes]
rs73772527	1.00[EUR][1000 genomes]
rs73772529	1.00[EUR][1000 genomes]
rs73772530	1.00[EUR][1000 genomes]
rs73772531	1.00[EUR][1000 genomes]
rs73772532	1.00[EUR][1000 genomes]
rs73772534	1.00[EUR][1000 genomes]
rs73776238	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776244	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776253	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483462	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483467	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483471	1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493324	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493330	1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493331	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493332	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493335	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
2	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132793200-132818000	Weak transcription	HepG2	liver
5	chr6:132804400-132820800	Weak transcription	Fetal Stomach	stomach
6	chr6:132805400-132818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:132805400-132819000	Weak transcription	HMEC	breast
8	chr6:132805400-132820000	Weak transcription	Liver	Liver
9	chr6:132805400-132822400	Weak transcription	NHEK	skin
10	chr6:132805800-132815600	Weak transcription	HSMM	muscle
11	chr6:132805800-132822600	Weak transcription	NHLF	lung
12	chr6:132811000-132820400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:132811400-132815800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:132811600-132815800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:132811600-132826000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:132811800-132816400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:132812000-132816000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:132812200-132815600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:132812200-132818800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:132812200-132819800	Weak transcription	Small Intestine	intestine
22	chr6:132812200-132820200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:132812200-132821000	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:132812200-132821200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:132812200-132822000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:132812200-132822600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:132812400-132821000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:132812600-132815800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:132812600-132818600	Weak transcription	Primary T cells from cord blood	blood
30	chr6:132812600-132820000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:132812600-132822000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:132812600-132822600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:132812800-132816000	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr6:132812800-132817000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:132812800-132822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:132812800-132823000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:132812800-132828800	Weak transcription	Fetal Brain Male	brain
38	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:132813000-132815600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:132813000-132818800	Weak transcription	Fetal Heart	heart
41	chr6:132813000-132819000	Weak transcription	HUVEC	blood vessel
42	chr6:132813000-132821000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:132813000-132821000	Weak transcription	NH-A	brain
44	chr6:132813000-132821200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:132813000-132822200	Weak transcription	Colonic Mucosa	Colon
46	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:132813200-132815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:132813200-132816000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:132813200-132816200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr6:132813200-132816800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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