Variant report

Variant	rs57190537
Chromosome Location	chr6:132832679-132832680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132832611..132834291-chr6:133118787..133121672,2	K562	blood:
2	chr6:132832429..132834669-chr6:133134284..133137002,3	K562	blood:

Variant related genes	Relation type
ENSG00000146409	Chromatin interaction
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12333184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57791045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9483471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:132824600-132832800	Weak transcription	Fetal Thymus	thymus
3	chr6:132824600-132832800	Weak transcription	NH-A	brain
4	chr6:132824600-132833000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:132824600-132833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:132826800-132833200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:132826800-132833600	Weak transcription	Gastric	stomach
8	chr6:132829400-132833000	Weak transcription	HSMM	muscle
9	chr6:132829400-132833600	Weak transcription	Spleen	Spleen
10	chr6:132829800-132833200	Weak transcription	Esophagus	oesophagus
11	chr6:132829800-132833600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:132829800-132833600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:132829800-132833600	Weak transcription	Left Ventricle	heart
14	chr6:132829800-132833600	Weak transcription	Lung	lung
15	chr6:132830000-132833000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:132830000-132833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:132830000-132834600	Active TSS	GM12878-XiMat	blood
18	chr6:132830600-132834800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:132830800-132832800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:132830800-132833200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
21	chr6:132831000-132833000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr6:132831200-132832800	Enhancers	Colon Smooth Muscle	Colon
23	chr6:132831600-132832800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:132831600-132833400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:132831800-132832800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:132831800-132832800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
27	chr6:132831800-132832800	Enhancers	Primary T cells from cord blood	blood
28	chr6:132831800-132832800	Enhancers	Stomach Mucosa	stomach
29	chr6:132831800-132833000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:132831800-132833000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:132831800-132833000	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr6:132831800-132833400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:132831800-132833400	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr6:132831800-132833400	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr6:132831800-132833400	Flanking Active TSS	Fetal Brain Female	brain
36	chr6:132831800-132833600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:132832000-132832800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:132832000-132832800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:132832000-132832800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr6:132832000-132832800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:132832000-132832800	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr6:132832000-132833000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:132832000-132833000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:132832000-132833000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr6:132832000-132833000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:132832000-132833000	Enhancers	Placenta Amnion	Placenta Amnion
47	chr6:132832000-132833000	Flanking Active TSS	K562	blood
48	chr6:132832000-132833200	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr6:132832000-132833200	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr6:132832000-132833200	Flanking Active TSS	HUVEC	blood vessel

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