Variant report

Variant	rs73772522
Chromosome Location	chr6:132831055-132831056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132829873..132832084-chr6:132832870..132835540,3	MCF-7	breast:
2	chr6:132827964..132832472-chr6:132833175..132836743,4	MCF-7	breast:
3	chr6:132827063..132829166-chr6:132830599..132832214,2	MCF-7	breast:
4	chr6:132828992..132831435-chr6:132832487..132835116,2	K562	blood:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12333184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57190537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57791045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9483471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132817400-132831800	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr6:132818200-132832400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:132820600-132832000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:132821200-132832000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:132821800-132832200	Weak transcription	A549	lung
9	chr6:132822800-132831800	Weak transcription	K562	blood
10	chr6:132823000-132832200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:132823200-132832000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:132823200-132832200	Weak transcription	Thymus	Thymus
13	chr6:132823200-132832400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:132823200-132832400	Weak transcription	HSMMtube	muscle
15	chr6:132823400-132831800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:132823400-132831800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:132823400-132832000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:132823400-132832000	Weak transcription	NHLF	lung
19	chr6:132823400-132832200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:132823400-132832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:132823400-132832200	Weak transcription	Colonic Mucosa	Colon
22	chr6:132823400-132832400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:132823600-132831800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:132823600-132832200	Weak transcription	Liver	Liver
25	chr6:132823600-132832400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:132823600-132832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:132823800-132831600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:132823800-132831800	Weak transcription	HepG2	liver
29	chr6:132824200-132832200	Weak transcription	Placenta	Placenta
30	chr6:132824400-132831800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:132824600-132831800	Weak transcription	Dnd41	blood
32	chr6:132824600-132832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:132824600-132832800	Weak transcription	Fetal Thymus	thymus
34	chr6:132824600-132832800	Weak transcription	NH-A	brain
35	chr6:132824600-132833000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:132824600-132833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:132824800-132831200	Weak transcription	Fetal Brain Female	brain
38	chr6:132824800-132831600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:132824800-132832200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:132824800-132832600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:132826400-132831200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:132826400-132832000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:132826600-132831800	Weak transcription	NHDF-Ad	bronchial
44	chr6:132826600-132832000	Weak transcription	Brain Germinal Matrix	brain
45	chr6:132826600-132832200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:132826800-132831800	Weak transcription	Right Atrium	heart
47	chr6:132826800-132831800	Weak transcription	Stomach Mucosa	stomach
48	chr6:132826800-132832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:132826800-132832200	Weak transcription	Psoas Muscle	Psoas
50	chr6:132826800-132832200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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