Variant report

Variant	rs57791045
Chromosome Location	chr6:132832399-132832400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132827964..132832472-chr6:132833175..132836743,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12333184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57190537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9483471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:132818200-132832400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:132823200-132832400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:132823200-132832400	Weak transcription	HSMMtube	muscle
5	chr6:132823400-132832400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:132823600-132832400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:132823600-132832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:132824600-132832800	Weak transcription	Fetal Thymus	thymus
9	chr6:132824600-132832800	Weak transcription	NH-A	brain
10	chr6:132824600-132833000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:132824600-132833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:132824800-132832600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:132826800-132833200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:132826800-132833600	Weak transcription	Gastric	stomach
15	chr6:132829200-132832600	Weak transcription	Aorta	Aorta
16	chr6:132829400-132833000	Weak transcription	HSMM	muscle
17	chr6:132829400-132833600	Weak transcription	Spleen	Spleen
18	chr6:132829600-132832600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:132829800-132832400	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:132829800-132833200	Weak transcription	Esophagus	oesophagus
21	chr6:132829800-132833600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:132829800-132833600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:132829800-132833600	Weak transcription	Left Ventricle	heart
24	chr6:132829800-132833600	Weak transcription	Lung	lung
25	chr6:132830000-132832400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:132830000-132833000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:132830000-132833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:132830000-132834600	Active TSS	GM12878-XiMat	blood
29	chr6:132830600-132834800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:132830800-132832400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:132830800-132832600	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:132830800-132832800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:132830800-132833200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
34	chr6:132831000-132832400	Enhancers	Fetal Brain Male	brain
35	chr6:132831000-132833000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:132831200-132832400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:132831200-132832600	Enhancers	Fetal Lung	lung
38	chr6:132831200-132832800	Enhancers	Colon Smooth Muscle	Colon
39	chr6:132831600-132832800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr6:132831600-132833400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:132831800-132832400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:132831800-132832400	Enhancers	Fetal Intestine Large	intestine
43	chr6:132831800-132832400	Enhancers	Fetal Kidney	kidney
44	chr6:132831800-132832400	Enhancers	Small Intestine	intestine
45	chr6:132831800-132832600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:132831800-132832600	Enhancers	Dnd41	blood
47	chr6:132831800-132832800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:132831800-132832800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
49	chr6:132831800-132832800	Enhancers	Primary T cells from cord blood	blood
50	chr6:132831800-132832800	Enhancers	Stomach Mucosa	stomach

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