Variant report

Variant	rs73772526
Chromosome Location	chr6:132835094-132835095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:132835019-132835382	GM12891	blood:	n/a	n/a
2	FOXA1	chr6:132834936-132835350	HepG2	liver:	n/a	n/a
3	ELF1	chr6:132835060-132835350	HepG2	liver:	n/a	n/a
4	SPI1	chr6:132834961-132835321	GM12891	blood:	n/a	n/a
5	ZMIZ1	chr6:132834166-132835189	K562	blood:	n/a	n/a
6	GATA1	chr6:132833013-132835536	PBDE	blood:	n/a	chr6:132833400-132833412 chr6:132833398-132833414 chr6:132833403-132833410 chr6:132833401-132833411 chr6:132833396-132833417 chr6:132833403-132833410 chr6:132833401-132833410 chr6:132834478-132834495 chr6:132833398-132833414 chr6:132833403-132833410
7	SPI1	chr6:132835007-132835349	GM12878	blood:	n/a	n/a
8	JUND	chr6:132834981-132835318	HepG2	liver:	n/a	n/a
9	RCOR1	chr6:132835055-132835273	GM12878	blood:	n/a	n/a
10	FOXA1	chr6:132834919-132835389	HepG2	liver:	n/a	n/a
11	JUN	chr6:132834932-132835303	HepG2	liver:	n/a	chr6:132835130-132835143
12	FOXA2	chr6:132834954-132835334	HepG2	liver:	n/a	n/a
13	ELF1	chr6:132834963-132835329	HepG2	liver:	n/a	n/a
14	FOXA1	chr6:132834297-132835431	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:132833459..132835564-chr6:132858519..132861211,2	K562	blood:
2	chr6:132835034..132837186-chr6:133135898..133138134,2	MCF-7	breast:
3	chr6:132833194..132835178-chr6:133134140..133136704,2	MCF-7	breast:

Variant related genes	Relation type
STX7	TF binding region
ENSG00000112306	Chromatin interaction
ENSG00000237110	Chromatin interaction
ENSG00000221500	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12333184	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57190537	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57791045	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911959	1.00[EUR][1000 genomes]
rs6912883	1.00[EUR][1000 genomes]
rs6913154	1.00[EUR][1000 genomes]
rs6928744	1.00[EUR][1000 genomes]
rs6934767	1.00[EUR][1000 genomes]
rs6935153	1.00[EUR][1000 genomes]
rs6935328	1.00[EUR][1000 genomes]
rs73547919	1.00[EUR][1000 genomes]
rs7356873	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356940	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772503	1.00[EUR][1000 genomes]
rs73772506	1.00[EUR][1000 genomes]
rs73772507	1.00[EUR][1000 genomes]
rs73772509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772515	0.83[AMR][1000 genomes]
rs73772522	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772527	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772529	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772530	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772531	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772534	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73776238	1.00[EUR][1000 genomes]
rs73776244	1.00[EUR][1000 genomes]
rs73776253	1.00[EUR][1000 genomes]
rs7744822	1.00[EUR][1000 genomes]
rs7764352	1.00[EUR][1000 genomes]
rs9483451	1.00[EUR][1000 genomes]
rs9483461	1.00[EUR][1000 genomes]
rs9483462	1.00[EUR][1000 genomes]
rs9483464	1.00[EUR][1000 genomes]
rs9483465	1.00[EUR][1000 genomes]
rs9483466	1.00[EUR][1000 genomes]
rs9483467	1.00[EUR][1000 genomes]
rs9483471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493303	1.00[EUR][1000 genomes]
rs9493304	1.00[EUR][1000 genomes]
rs9493307	1.00[EUR][1000 genomes]
rs9493320	1.00[EUR][1000 genomes]
rs9493322	1.00[EUR][1000 genomes]
rs9493324	1.00[EUR][1000 genomes]
rs9493330	1.00[EUR][1000 genomes]
rs9493331	1.00[EUR][1000 genomes]
rs9493332	1.00[EUR][1000 genomes]
rs9493334	1.00[EUR][1000 genomes]
rs9493335	1.00[EUR][1000 genomes]
rs9493337	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132832800-132835200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:132833200-132835200	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr6:132833200-132835400	Active TSS	Brain Cingulate Gyrus	brain
4	chr6:132833200-132835400	Active TSS	Rectal Smooth Muscle	rectum
5	chr6:132834200-132835400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:132834400-132835200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr6:132834400-132835200	Flanking Active TSS	Primary B cells from peripheral blood	blood
8	chr6:132834400-132835200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:132834400-132835200	Flanking Active TSS	Liver	Liver
10	chr6:132834400-132835200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr6:132834400-132835400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:132834400-132835400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:132834400-132835400	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr6:132834400-132835400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:132834400-132835400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:132834600-132835200	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:132834600-132835400	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr6:132834600-132835400	Flanking Active TSS	HepG2	liver
19	chr6:132834800-132835200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:132834800-132835200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:132834800-132835200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:132834800-132835200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:132834800-132835200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:132834800-132835200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:132834800-132835200	Enhancers	Fetal Lung	lung
26	chr6:132834800-132835200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:132834800-132835200	Enhancers	Dnd41	blood
28	chr6:132834800-132835200	Enhancers	Hela-S3	cervix
29	chr6:132834800-132835200	Flanking Active TSS	NHEK	skin
30	chr6:132834800-132835200	Enhancers	NHLF	lung
31	chr6:132834800-132835400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:132834800-132835400	Enhancers	Fetal Brain Male	brain
33	chr6:132834800-132835400	Enhancers	Fetal Heart	heart
34	chr6:132834800-132835400	Enhancers	Stomach Mucosa	stomach
35	chr6:132834800-132835600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:132834800-132835600	Enhancers	NH-A	brain
37	chr6:132834800-132835800	Enhancers	Brain Substantia Nigra	brain
38	chr6:132834800-132836000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:132834800-132837000	Enhancers	Osteobl	bone
40	chr6:132835000-132835200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr6:132835000-132835200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:132835000-132835200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr6:132835000-132835200	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:132835000-132835200	Enhancers	Brain Angular Gyrus	brain
45	chr6:132835000-132835200	Active TSS	Brain Anterior Caudate	brain
46	chr6:132835000-132835200	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:132835000-132835200	Enhancers	Stomach Smooth Muscle	stomach
48	chr6:132835000-132835200	Enhancers	HMEC	breast
49	chr6:132835000-132835200	Flanking Active TSS	NHDF-Ad	bronchial
50	chr6:132835000-132835400	Enhancers	Brain Hippocampus Middle	brain

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